Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq568 352 1e-94 >seq568 Length=2932 Score = 352 bits (390), Expect = 1e-94 Identities = 410/553 (74%), Gaps = 14/553 (3%) Strand=Plus/Plus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71 || || |||||| |||||||| ||| || ||||| | || || || ||| |||| Sbjct 164 GTGTCACAGTCAGGCTCCCTTCTGCCTTTGCACTCCTCGAATGGTTTCCGTCCATTCTGA 223 Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131 ||||||||||| ||||||||| ||| ||| ||||| | ||||||||||| ||||| ||| Sbjct 224 GGGAACCTTTGAGCGCCTCCGATACCCTTTCGGAGG-CGACCGCCCCAGTCAAACTCCCC 282 Query 132 ACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAG 191 ||| || ||||||| || | | | || | |||||||| | ||| ||| || | Sbjct 283 GTCAGACATTGTCCCCCGTCCGGCTTACGGACGTAGGTTAGAAACCCAGTACTCAAAGGG 342 Query 192 TGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTAT 251 |||||| ||||| | |||| | ||| |||| || | | ||||||||||| Sbjct 343 TGGTATCCCAACATTGGCTCCTTATGAACTGGCGTTCATATCTCTTTGCCTCCCACCTAT 402 Query 252 CCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC-GGGGTCTTTT 310 ||| ||| | |||||| | ||| || ||| || ||| ||| ||| ||||||||| Sbjct 403 CCTGTACATTCAGCACCGTGTCCCAGTATCAAACTGGAGTAAAGCTCCATGGGGTCTTTC 462 Query 311 CGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTT 370 ||||||| ||| | | | |||||||| ||| | ||| ||||||||||||| | ||| Sbjct 463 CGTCCTGGCGCAGGTAGCCAGCATCTTCACTGGCACTTCAATTTCACCGGGGGCATTGTT 522 Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||||| | || ||||||| ||||||| |||||||||||||||||||||||||| Sbjct 523 GAGACAGCGCTCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 582 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCC 490 |||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct 583 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATT------- 635 Query 491 TCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA 550 || | | || | || || ||||||||||||||||||||||||||||||||| Sbjct 636 -----CAAAGCTTCGTTTCCTGACTTCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA 690 Query 551 GTCCGTATACCTC 563 | || ||||| || Sbjct 691 GCCCATATACTTC 703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702371348608