Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26]
1,683 sequences; 84,405,302 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq568 352 1e-94
>seq568
Length=2932
Score = 352 bits (390), Expect = 1e-94
Identities = 410/553 (74%), Gaps = 14/553 (3%)
Strand=Plus/Plus
Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71
|| || |||||| |||||||| ||| || ||||| | || || || ||| ||||
Sbjct 164 GTGTCACAGTCAGGCTCCCTTCTGCCTTTGCACTCCTCGAATGGTTTCCGTCCATTCTGA 223
Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131
||||||||||| ||||||||| ||| ||| ||||| | ||||||||||| ||||| |||
Sbjct 224 GGGAACCTTTGAGCGCCTCCGATACCCTTTCGGAGG-CGACCGCCCCAGTCAAACTCCCC 282
Query 132 ACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAG 191
||| || ||||||| || | | | || | |||||||| | ||| ||| || |
Sbjct 283 GTCAGACATTGTCCCCCGTCCGGCTTACGGACGTAGGTTAGAAACCCAGTACTCAAAGGG 342
Query 192 TGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTAT 251
|||||| ||||| | |||| | ||| |||| || | | |||||||||||
Sbjct 343 TGGTATCCCAACATTGGCTCCTTATGAACTGGCGTTCATATCTCTTTGCCTCCCACCTAT 402
Query 252 CCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC-GGGGTCTTTT 310
||| ||| | |||||| | ||| || ||| || ||| ||| ||| |||||||||
Sbjct 403 CCTGTACATTCAGCACCGTGTCCCAGTATCAAACTGGAGTAAAGCTCCATGGGGTCTTTC 462
Query 311 CGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTT 370
||||||| ||| | | | |||||||| ||| | ||| ||||||||||||| | |||
Sbjct 463 CGTCCTGGCGCAGGTAGCCAGCATCTTCACTGGCACTTCAATTTCACCGGGGGCATTGTT 522
Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430
|||||||| | || ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 523 GAGACAGCGCTCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 582
Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCC 490
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 583 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATT------- 635
Query 491 TCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA 550
|| | | || | || || |||||||||||||||||||||||||||||||||
Sbjct 636 -----CAAAGCTTCGTTTCCTGACTTCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA 690
Query 551 GTCCGTATACCTC 563
| || ||||| ||
Sbjct 691 GCCCATATACTTC 703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702371348608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |