Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq352 104 4e-20 seq233 102 1e-19 seq143 102 1e-19 seq221 98.7 2e-18 seq35 93.3 7e-17 seq82 80.6 4e-13 >seq352 Length=11155 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 542 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 485 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 484 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 431 >seq233 Length=75887 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || |||| | |||| Sbjct 29143 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGCTGAAAGGCCAGT 29086 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 29085 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 29033 Score = 93.3 bits (102), Expect = 7e-17 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || |||| | |||| Sbjct 59655 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGCTGAAAGGCCAGT 59598 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | || |||||||||||||| ||| ||| ||||| ||||||||||||||||| Sbjct 59597 GGCGAGAAGCTACCATCTGAAAGATAATGACTGAAAGCCTCTAAGTCAGAATC 59545 >seq143 Length=170708 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || |||| | |||| Sbjct 157601 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGATTGGCTGAAATGCCAGT 157658 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 157659 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 157711 >seq221 Length=82606 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | || |||| | |||||| |||| || |||| | |||| Sbjct 41980 GTATGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGCTGAAAGGCCAGT 42037 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 42038 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 42090 Score = 95.1 bits (104), Expect = 2e-17 Identities = 89/111 (80%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || || || | |||||| |||| || ||| | |||| Sbjct 11047 GTACGAGAGGAACCGCAGGAT-CA-AACATTTGGTTCATGCGCTTGGGTGAAAGGCCAGT 11104 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAA 111 | ||||||||||||||||| ||| ||| ||||||||||||||||||||| Sbjct 11105 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAA 11155 >seq35 Length=533676 Score = 93.3 bits (102), Expect = 7e-17 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || |||| | |||| Sbjct 232200 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGTTTGGCTGAAAGGCCAGT 232143 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||| |||| ||| ||| ||||||||||||||||||||||| Sbjct 232142 GACGCGAAGCTACTGTCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 232090 >seq82 Length=326422 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || |||| || | Sbjct 312304 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGCTGAAAAGATCGG 312247 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 ||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 312246 AAGACGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 312194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819186643712