Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq352 383 5e-104 seq233 293 7e-77 >seq352 Length=11155 Score = 383 bits (424), Expect = 5e-104 Identities = 420/558 (75%), Gaps = 59/558 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 7384 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 7443 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7444 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 7503 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 7504 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 7563 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 7564 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 7623 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 || | |||||| | | ||||| || ||||||| Sbjct 7624 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 7683 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 7684 CCGGCCGGAGCCGGGAGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 7742 Query 326 CC-------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 || |||| ||||| | |||||||||||||||||||||||||| | Sbjct 7743 CCCCCCCGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAG 7801 Query 372 TTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 ||||||| |||| | || | | | |||| ||| |||||||||||||||||||||| Sbjct 7802 TTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATT 7861 Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 ||||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 7862 CGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAA 7921 Query 487 GCATATGACTACTGGCAG 504 ||||||| |||||||||| Sbjct 7922 GCATATG-CTACTGGCAG 7938 >seq233 Length=75887 Score = 293 bits (324), Expect = 7e-77 Identities = 363/490 (74%), Gaps = 35/490 (7%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||| Sbjct 16094 TATTTTTCGTCACTACCTCCCCGATCTGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCC 16153 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| Sbjct 16154 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTA 16213 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||| || || | ||||||||||||||||| | || |||| Sbjct 16214 ACCGTTGTCACCATGGTAAGCACGTAGCGTACCATCGAAAGTTGATGAGCAAGTCATTTC 16273 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA--- 279 || || | ||||||| | | || |||||| | ||||||| || ||||||| Sbjct 16274 AAAGATTCGTCGCCGGTGCTGGACCGTGCGATCAGCATAGTTATTCCGATTCACCAACCG 16333 Query 280 -----GGA--GCCCCGAAGGGCG---------TTGGTTTTTTATCTAATAAATACACCCC 323 ||| | | | ||| ||| |||||||| || | ||||||| | | || Sbjct 16334 TTGACGGACGGACGCAAAGAGCGAAAGTCCGATTGGTTTTGTA-CCAATAAATGCGCTCC 16392 Query 324 ------TTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATC 376 || || | || | ||| | ||||||||||||||||||||| |||| |||||| Sbjct 16393 GCCGCATTGCG-CGCCGAAGCTTTGAGGCATGTATTAGCTCTAGAATTTCCACAGTTATC 16451 Query 377 CATGTAG-TA-AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434 || || | || || || | ||| || ||| | ||||||||||||||| | || Sbjct 16452 CAAGTGGATATCAGTTCTTGC----GAACAATGGCTGTTATAATGAGCCATTCGCGGCTT 16507 Query 435 CACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494 ||| || || | | ||| || ||||||||||| |||||||||||||||||||| Sbjct 16508 CACCGTTCAG-CGGTGTGCGCTTGCACTTGCATGGCTTAGTCTTTGAGACAAGCATATGA 16566 Query 495 CTACTGGCAG 504 |||||||||| Sbjct 16567 CTACTGGCAG 16576 Score = 293 bits (324), Expect = 7e-77 Identities = 363/490 (74%), Gaps = 35/490 (7%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||| Sbjct 43841 TATTTTTCGTCACTACCTCCCCGATCTGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCC 43900 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| Sbjct 43901 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTA 43960 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||| || || | ||||||||||||||||| | || |||| Sbjct 43961 ACCGTTGTCACCATGGTAAGCACGTAGCGTACCATCGAAAGTTGATGAGCAAGTCATTTC 44020 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA--- 279 || || | ||||||| | | || |||||| | ||||||| || ||||||| Sbjct 44021 AAAGATTCGTCGCCGGTGCTGGACCGTGCGATCAGCATAGTTATTCCGATTCACCAACCG 44080 Query 280 -----GGA--GCCCCGAAGGGCG---------TTGGTTTTTTATCTAATAAATACACCCC 323 ||| | | | ||| ||| |||||||| || | ||||||| | | || Sbjct 44081 TTGACGGACGGACGCAAAGAGCGAAAGTCCGATTGGTTTTGTA-CCAATAAATGCGCTCC 44139 Query 324 ------TTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATC 376 || || | || | ||| | ||||||||||||||||||||| |||| |||||| Sbjct 44140 GCCGCATTGCG-CGCCGAAGCTTTGAGGCATGTATTAGCTCTAGAATTTCCACAGTTATC 44198 Query 377 CATGTAG-TA-AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434 || || | || || || | ||| || ||| | ||||||||||||||| | || Sbjct 44199 CAAGTGGATATCAGTTCTTGC----GAACAATGGCTGTTATAATGAGCCATTCGCGGCTT 44254 Query 435 CACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494 ||| || || | | ||| || ||||||||||| |||||||||||||||||||| Sbjct 44255 CACCGTTCAG-CGGTGTGCGCTTGCACTTGCATGGCTTAGTCTTTGAGACAAGCATATGA 44313 Query 495 CTACTGGCAG 504 |||||||||| Sbjct 44314 CTACTGGCAG 44323 Score = 246 bits (272), Expect = 9e-63 Identities = 332/456 (73%), Gaps = 35/456 (8%) Strand=Plus/Plus Query 77 GGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 136 ||| | ||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 10122 GGTGAATTGCGTGCCTGCTGCTTTCGTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 10181 Query 137 CGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCA 196 |||| ||||||||| |||| |||||| |||||| ||||||||| || || | ||||| Sbjct 10182 CGGAGTCGAACCCTGATTCTCCGTTAACCGTTGTCACCATGGTAAGCACGTAGCGTACCA 10241 Query 197 TCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTC 256 |||||||||||| | || |||| || || | ||||||| | | || |||||| Sbjct 10242 TCGAAAGTTGATGAGCAAGTCATTTCAAAGATTCGTCGCCGGTGCTGGACCGTGCGATCA 10301 Query 257 GTTAAGTTATTATGAATCACCAA--------GGA--GCCCCGAAGGGCG---------TT 297 | ||||||| || ||||||| ||| | | | ||| ||| || Sbjct 10302 GCATAGTTATTCCGATTCACCAACCGTTGACGGACGGACGCAAAGAGCGAAAGTCCGATT 10361 Query 298 GGTTTTTTATCTAATAAATACACCCC------TTCCGAAGTCGGGGTTTTTA-GCATGTA 350 |||||| || | ||||||| | | || || || | || | ||| | ||||||| Sbjct 10362 GGTTTTGTA-CCAATAAATGCGCTCCGCCGCATTGCG-CGCCGAAGCTTTGAGGCATGTA 10419 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAG-TA-AGGTACTATCAAATAAACGATAA 408 |||||||||||||| |||| |||||||| || | || || || | ||| || Sbjct 10420 TTAGCTCTAGAATTTCCACAGTTATCCAAGTGGATATCAGTTCTTGC----GAACAATGG 10475 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||| | ||||||||||||||| | ||||| || || | | ||| || |||||| Sbjct 10476 CTGTTATAATGAGCCATTCGCGGCTTCACCGTTCAG-CGGTGTGCGCTTGCACTTGCATG 10534 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| |||||||||||||||||||||||||||||| Sbjct 10535 GCTTAGTCTTTGAGACAAGCATATGACTACTGGCAG 10570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510374579968