Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26]
1,683 sequences; 84,405,302 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq352 383 5e-104
seq233 293 7e-77
>seq352
Length=11155
Score = 383 bits (424), Expect = 5e-104
Identities = 420/558 (75%), Gaps = 59/558 (11%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 7384 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 7443
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7444 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 7503
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 7504 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 7563
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241
|| |||||||||||||||||||||||||| || ||||| | |||||| | |
Sbjct 7564 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 7623
Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279
|| | |||||| | | ||||| || |||||||
Sbjct 7624 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 7683
Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325
|||||| || || | ||||| |||| |||| |||||| ||| | |
Sbjct 7684 CCGGCCGGAGCCGGGAGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 7742
Query 326 CC-------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGG 371
|| |||| ||||| | |||||||||||||||||||||||||| |
Sbjct 7743 CCCCCCCGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAG 7801
Query 372 TTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426
||||||| |||| | || | | | |||| ||| ||||||||||||||||||||||
Sbjct 7802 TTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATT 7861
Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486
||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 7862 CGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAA 7921
Query 487 GCATATGACTACTGGCAG 504
||||||| ||||||||||
Sbjct 7922 GCATATG-CTACTGGCAG 7938
>seq233
Length=75887
Score = 293 bits (324), Expect = 7e-77
Identities = 363/490 (74%), Gaps = 35/490 (7%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 16094 TATTTTTCGTCACTACCTCCCCGATCTGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCC 16153
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
|||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 16154 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTA 16213
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
|||||| ||||||||| || || | ||||||||||||||||| | || ||||
Sbjct 16214 ACCGTTGTCACCATGGTAAGCACGTAGCGTACCATCGAAAGTTGATGAGCAAGTCATTTC 16273
Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA--- 279
|| || | ||||||| | | || |||||| | ||||||| || |||||||
Sbjct 16274 AAAGATTCGTCGCCGGTGCTGGACCGTGCGATCAGCATAGTTATTCCGATTCACCAACCG 16333
Query 280 -----GGA--GCCCCGAAGGGCG---------TTGGTTTTTTATCTAATAAATACACCCC 323
||| | | | ||| ||| |||||||| || | ||||||| | | ||
Sbjct 16334 TTGACGGACGGACGCAAAGAGCGAAAGTCCGATTGGTTTTGTA-CCAATAAATGCGCTCC 16392
Query 324 ------TTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATC 376
|| || | || | ||| | ||||||||||||||||||||| |||| ||||||
Sbjct 16393 GCCGCATTGCG-CGCCGAAGCTTTGAGGCATGTATTAGCTCTAGAATTTCCACAGTTATC 16451
Query 377 CATGTAG-TA-AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434
|| || | || || || | ||| || ||| | ||||||||||||||| | ||
Sbjct 16452 CAAGTGGATATCAGTTCTTGC----GAACAATGGCTGTTATAATGAGCCATTCGCGGCTT 16507
Query 435 CACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494
||| || || | | ||| || ||||||||||| ||||||||||||||||||||
Sbjct 16508 CACCGTTCAG-CGGTGTGCGCTTGCACTTGCATGGCTTAGTCTTTGAGACAAGCATATGA 16566
Query 495 CTACTGGCAG 504
||||||||||
Sbjct 16567 CTACTGGCAG 16576
Score = 293 bits (324), Expect = 7e-77
Identities = 363/490 (74%), Gaps = 35/490 (7%)
Strand=Plus/Plus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||| | ||||||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 43841 TATTTTTCGTCACTACCTCCCCGATCTGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCC 43900
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
|||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 43901 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTA 43960
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
|||||| ||||||||| || || | ||||||||||||||||| | || ||||
Sbjct 43961 ACCGTTGTCACCATGGTAAGCACGTAGCGTACCATCGAAAGTTGATGAGCAAGTCATTTC 44020
Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA--- 279
|| || | ||||||| | | || |||||| | ||||||| || |||||||
Sbjct 44021 AAAGATTCGTCGCCGGTGCTGGACCGTGCGATCAGCATAGTTATTCCGATTCACCAACCG 44080
Query 280 -----GGA--GCCCCGAAGGGCG---------TTGGTTTTTTATCTAATAAATACACCCC 323
||| | | | ||| ||| |||||||| || | ||||||| | | ||
Sbjct 44081 TTGACGGACGGACGCAAAGAGCGAAAGTCCGATTGGTTTTGTA-CCAATAAATGCGCTCC 44139
Query 324 ------TTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATC 376
|| || | || | ||| | ||||||||||||||||||||| |||| ||||||
Sbjct 44140 GCCGCATTGCG-CGCCGAAGCTTTGAGGCATGTATTAGCTCTAGAATTTCCACAGTTATC 44198
Query 377 CATGTAG-TA-AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434
|| || | || || || | ||| || ||| | ||||||||||||||| | ||
Sbjct 44199 CAAGTGGATATCAGTTCTTGC----GAACAATGGCTGTTATAATGAGCCATTCGCGGCTT 44254
Query 435 CACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494
||| || || | | ||| || ||||||||||| ||||||||||||||||||||
Sbjct 44255 CACCGTTCAG-CGGTGTGCGCTTGCACTTGCATGGCTTAGTCTTTGAGACAAGCATATGA 44313
Query 495 CTACTGGCAG 504
||||||||||
Sbjct 44314 CTACTGGCAG 44323
Score = 246 bits (272), Expect = 9e-63
Identities = 332/456 (73%), Gaps = 35/456 (8%)
Strand=Plus/Plus
Query 77 GGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 136
||| | ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 10122 GGTGAATTGCGTGCCTGCTGCTTTCGTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 10181
Query 137 CGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCA 196
|||| ||||||||| |||| |||||| |||||| ||||||||| || || | |||||
Sbjct 10182 CGGAGTCGAACCCTGATTCTCCGTTAACCGTTGTCACCATGGTAAGCACGTAGCGTACCA 10241
Query 197 TCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTC 256
|||||||||||| | || |||| || || | ||||||| | | || ||||||
Sbjct 10242 TCGAAAGTTGATGAGCAAGTCATTTCAAAGATTCGTCGCCGGTGCTGGACCGTGCGATCA 10301
Query 257 GTTAAGTTATTATGAATCACCAA--------GGA--GCCCCGAAGGGCG---------TT 297
| ||||||| || ||||||| ||| | | | ||| ||| ||
Sbjct 10302 GCATAGTTATTCCGATTCACCAACCGTTGACGGACGGACGCAAAGAGCGAAAGTCCGATT 10361
Query 298 GGTTTTTTATCTAATAAATACACCCC------TTCCGAAGTCGGGGTTTTTA-GCATGTA 350
|||||| || | ||||||| | | || || || | || | ||| | |||||||
Sbjct 10362 GGTTTTGTA-CCAATAAATGCGCTCCGCCGCATTGCG-CGCCGAAGCTTTGAGGCATGTA 10419
Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAG-TA-AGGTACTATCAAATAAACGATAA 408
|||||||||||||| |||| |||||||| || | || || || | ||| ||
Sbjct 10420 TTAGCTCTAGAATTTCCACAGTTATCCAAGTGGATATCAGTTCTTGC----GAACAATGG 10475
Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468
||| | ||||||||||||||| | ||||| || || | | ||| || ||||||
Sbjct 10476 CTGTTATAATGAGCCATTCGCGGCTTCACCGTTCAG-CGGTGTGCGCTTGCACTTGCATG 10534
Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||| ||||||||||||||||||||||||||||||
Sbjct 10535 GCTTAGTCTTTGAGACAAGCATATGACTACTGGCAG 10570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510374579968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |