Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq21 87.8 1e-12 >seq21 Length=749496 Score = 87.8 bits (96), Expect = 1e-12 Identities = 181/267 (68%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 65159 TAGAAATGCATCGATGATAATTTTG-CATAATTCGGCTCGGCCACATGCATATTCAACGA 65217 || ||||||||||| | |||| ||| |||| || || ||||| || ||||||| ||| Sbjct 54662 TAAAAATGCATCGAAG-TAATCTTGCCATAGTTTGGACGGGCCATGTGTATATTCAGCGA 54720 Query 65218 CTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGA 65277 || |||||| | | || |||||||| ||||||||||| ||||| | ||| Sbjct 54721 TTGCGACTGATCAACGAAAGCCCCACGATCGGCAGCCATGTCGATGATCACCTTTTGCGA 54780 Query 65278 TATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTG 65337 || ||||| || || ||||||| |||| ||| |||||| ||| |||| ||| Sbjct 54781 AATTTCCCACACCGTTTTGTACAACTCGCGTATCTCTTCAGGAATCGACTCGATGTGCTG 54840 Query 65338 GACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTCTGACCACAAACCCAAATC 65397 ||||| || ||| || | || ||| || |||||| ||| | |||| || Sbjct 54841 CACTGAGCCCTTACGGGCCACGATCTCATTCTTCAGCGACTCGTTCCAAATGCCCAGTTC 54900 Query 65398 GATAAGATGTTGAACCAAGTGACGATT 65424 || |||| || | || ||| |||| Sbjct 54901 GACGAGATCTTTCATCAGGTGGTGATT 54927 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 65696 TCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGT 65755 |||||||| | | ||||| | || | ||||||| |||||||| |||||||| | Sbjct 55305 TCCTTGGCCAACTCGCAGCTCGCTTCCAATGCGGCATGGTAAATGGTTTCGAAAATATGA 55364 Query 65756 CGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTC 65814 ||||| || | ||| || | |||| |||| ||| | ||| | | ||||| ||| Sbjct 55365 CGATTGAGCTTGAATGCTTCTGCAGACTCGAACGG-ATAGCGCATTAAAATAAAAGCGTC 55423 Query 65815 GGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCT 65868 || || || || |||||||| || ||||||||||| |||| ||||| |||||| Sbjct 55424 CGCGAGCCCCTGCACTCCAATGCCTATGGGACGATGTCGCATATTGG-ACGTCT 55476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 || || || |||||||||| || | || || || || || ||| | ||| | Sbjct 54988 ACCTGAAATTCGCCGGACAAAACTCTCCGTGTGTATATATTTGAAGTGTACGCTTCGACC 55047 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 ||||| ||||||| | |||||||||||| |||||||| ||||||||||| || | || | Sbjct 55048 GATTCGTTGTTGCCCAAAATTTGGGCAGTGGATGCAGTCGGCATGGGAGCAACAAGCAGT 55107 Query 65549 GAGTTTCGCAATCCGT 65564 ||||||| || |||| Sbjct 55108 GAGTTTCTCACGCCGT 55123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559845259120