Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq117 165 1e-38 >seq117 Length=26990 Score = 165 bits (182), Expect = 1e-38 Identities = 171/219 (78%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||| ||||||||||||||||||||||| |||| ||||||||||||||||| |||| ||| Sbjct 17520 GTACGAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTCGCGCTTACT-GGAAATTC 17463 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| || || ||||||||| || |||| |||||| | ||||| |||| Sbjct 17462 CTCGTTCGAGGAAAATAATTGCAATTCCCTGTCCCAGTCACGAGAACGTTTCAGCCGATT 17403 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| | || | |||| | | | | || ||| | |||||||||| ||||||| Sbjct 17402 TCCCGGCCTTGACAGGCCGGGCTTGAACGCACGGTGACGCCGTCAGTGTAGCACGCGTGC 17343 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||| ||||||||||||||||||||||| Sbjct 17342 AGCCCCGTACATCTACGGGCATCACAGACCTGTTATTGC 17304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751997770790