Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq117 141 1e-31 >seq117 Length=26990 Score = 141 bits (156), Expect = 1e-31 Identities = 99/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||| ||| | |||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 17148 TTAGTAGGCCAGAGTCTCGTTCGTTATCGGAATTAGCCAGACAAATCGCTCCACCAACTA 17089 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||||||||||| ||||| |||||||||||||||| | ||||||| Sbjct 17088 ACAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTCTTGATCTGTC 17036 Score = 91.5 bits (100), Expect = 2e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 5 CGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 64 ||||| | ||||||||||||| ||||||| |||| | ||||||| ||||||||||||||| Sbjct 17371 CGGTGACGCCGTCAGTGTAGCACGCGTGCAGCCCCGTACATCTACGGGCATCACAGACCT 17312 Query 65 GTTATTGC 72 |||||||| Sbjct 17311 GTTATTGC 17304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796797637986