Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq117 300 3e-79 seq91 289 5e-76 seq6 255 1e-65 seq1 159 6e-37 seq30 114 2e-23 seq40 86.0 1e-14 >seq117 Length=26990 Score = 300 bits (332), Expect = 3e-79 Identities = 245/297 (82%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCA----TCAGTAGGGTAAAACTAACCTGT 56 |||| ||| | |||| || ||| ||||||| ||||||||||||||||||||||| Sbjct 13992 TACTGAGCAGGATTAGTAT---GGCAACGGTCAGTGATCAGTAGGGTAAAACTAACCTGT 13936 Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 13935 CTCACGACGGTNTAAACCCAGCTCACGTTCCCTATTTGTGGGTGAACAATCCAAAGCTTG 13876 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 |||||| ||||||| ||| ||||||| |||| ||||||||| ||| |||||||||||| Sbjct 13875 GCGAATTGTGCTTCGCAATGGTAGGAAGGGCCGTCATCGAAGGTTCAGAAAGCAACGTCG 13816 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 ||||| ||||||||||||| || ||||||||||||||||||||||||||| || |||| Sbjct 13815 CTATGGGCGCTTGGCTGCCAGAACCCAGTTATCCCTGTGGTAACTTTTCTGACAGCTCTT 13756 Query 237 GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | |||| | | | |||||||||||||||||| |||| | | | ||||| Sbjct 13755 ACATGAAATCTGCAAAATCAAAAGGATCGATAGGCCACGGTTTCGAGCTCTCTATTC 13699 >seq91 Length=47874 Score = 289 bits (320), Expect = 5e-76 Identities = 242/294 (82%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||| | || |||||||||||||||||||| |||||| Sbjct 10300 TACTGAGCAGGATTACTATAGCAACGATCAGTGATCAGTAGGGTAAAACTAACGTGTCTC 10241 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||| ||||||||||||||||||| ||||||||| ||||||| | | || Sbjct 10240 ACGACGGTCTAAATCCAGCTCACGTTCCCTATTGGTGGGTGAAGAATCCAATGGCTGGCG 10181 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||| ||||||| |||||||||||||| | |||||||| Sbjct 10180 TATTCTGCTTCGCAATGATAGGAAGACCCGACATTGAAGGATCAAAAAGTATCGTCGCTA 10121 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| | Sbjct 10120 TGGGCGCTTGGCTTCCACAAGCCAGTTATCCTTGTGGTAACTTTTCT-GCACCTCTGACG 10062 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | | | |||||||||||||||| ||||| ||| | ||||| Sbjct 10061 TGAAATCCGCAAAATCAAGAGGATCGATAGGCCACGCTTTCGCGGTCTCTATTC 10008 >seq6 Length=2290552 Score = 255 bits (282), Expect = 1e-65 Identities = 226/281 (80%), Gaps = 1/281 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||||| ||||| |||| || | || | ||||||||||||||||| ||||||| Sbjct 813915 TACTCAGCGGGATTACTATTGCAATGATCAGTGACCAGTAGGGTAAAACTAATCTGTCTC 813974 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||| ||||||||| |||||||||| ||| |||| ||||||||||||| ||| || Sbjct 813975 ACTACGAAGTAAACCCAGTTCACGTTCCCAATTGGTGGATGAACAATCCAACACTTGACG 814034 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 | ||||||| || |||||||||| || |||||| ||||||||| |||||||||| |||| Sbjct 814035 AGTTCTGCTCCGCAATGATAGGAATAGGCGACATTGAAGGATCACAAAGCAACGTTGCTA 814094 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || || || ||||||||||||||||||||||| |||||| |||||||| || |||| | Sbjct 814095 TGGACACTCGGCTGCCACAAGCCAGTTATCCCCGTGGTATCTTTTCTGACATCTCTTACA 814154 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 |||| | | |||||||||||||||||| ||||| Sbjct 814155 AGAAATCCGCAAAATCAAAAGGATCGATAGGCCACGCTTTC 814195 >seq1 Length=4309324 Score = 159 bits (176), Expect = 6e-37 Identities = 180/238 (76%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116 |||| ||||| ||||||||| || | ||| |||| |||||||||||||||||||||| Sbjct 183997 CTCACGACGGAATAAACCCAGTTCGCATTCTTTATTGGTGGGTGAACAATCCAACGCTTG 183938 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 || | ||||| || |||| ||||||||| |||| ||||| || ||||| | | Sbjct 183937 ACGTGTCCTGCTCCGCAATGACAGGAAGAGCGGACACTGAAGG---AAGAAGCACAGCTG 183881 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 || |||||| |||| ||||| |||||||| | ||||||||||||||| | || |||| Sbjct 183880 CTTCAAACGCTCGGCTTCCACAGGCCAGTTAGCACTGTGGTAACTTTTCCGACAACTCTG 183821 Query 237 GCCTCAAATTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || | ||| | || | | |||||||||||||| ||| ||||| ||| ||||| Sbjct 183820 GCATGAAA-TCCGCAAAATTAAAAGGATCGATAGGTCACGCTTTCGCGGTCCCTATTC 183764 >seq30 Length=737169 Score = 114 bits (126), Expect = 2e-23 Identities = 122/160 (76%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 || |||||||||||||| ||||||| | ||||||| ||| ||| | | ||| || | Sbjct 417077 ATTGGAAGAGCCGACATAGAAGGATGATAAAGCAAACGCGCCATGCAGGACTGGGTGTCG 417136 Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-- 254 ||| ||||||||||||||||||||||||||| ||| ||| || ||| | || | Sbjct 417137 CAAACCAGTTATCCCTGTGGTAACTTTTCTGACACATCTTGCAGGAAA---CCAGCAAAA 417193 Query 255 -CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||||||||||||||||| || || ||| | ||||| Sbjct 417194 TCAAAAGGATCGATAGGCCACGCTATCGCGGTATTTATTC 417233 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 || ||||| |||||||||||| || ||||| |||||||| |||||||||| |||||||| Sbjct 417017 GTGATCAGAAGGGTAAAACTAGTCTATCTCACGACGGTCTTAACCCAGCTCGCGTTCCCT 417076 Query 90 ATT 92 ||| Sbjct 417077 ATT 417079 >seq40 Length=417382 Score = 86.0 bits (94), Expect = 1e-14 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||| | |||||||||||||||||||||||||||||| Sbjct 382173 TACTGAGCAGGATTACTATAGCAACGATCAGTCATCAGTAGGGTAAAACTAACCTGTCTC 382114 Query 60 ATGACGGTCTAAACCCA 76 | ||||||||||||||| Sbjct 382113 ACGACGGTCTAAACCCA 382097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854397385536