Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq117 163 5e-38 >seq117 Length=26990 Score = 163 bits (180), Expect = 5e-38 Identities = 170/219 (78%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||| ||||||| | |||| ||||||| ||||||||||| | Sbjct 17304 GCAATAACAGGTCTGTGATGCCCGTAGATGTACGGGGCTGCACGCGTGCTACACTGACGG 17363 Query 174 AGCCAACGAG--TTCATCACCTTGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGT 229 | || || | |||| || |||| | |||| | ||| |||| | |||| | | Sbjct 17364 CGTCACCGTGCGTTCAAGCCC--GGCCTGTCAAGGCC-GGGAAATCGGCTGAAACGTTCT 17420 Query 230 CGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCG 289 |||| |||| || | |||||||||||| || |||||||||| | |||||||||| Sbjct 17421 CGTGACTGGGACAGGGAATTGCAATTATTTTCCTCGAACGAGGAATTTCCAGTAAGCGCG 17480 Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| ||||||| ||||||||||||||| ||| Sbjct 17481 AGTCATCAGCTTGCGTTGACTACGTCCCTGCCCTTCGTA 17519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947197101568