Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq91 89.7 8e-16 seq117 80.6 4e-13 seq1 78.8 2e-12 >seq91 Length=47874 Score = 89.7 bits (98), Expect = 8e-16 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | | |||| | |||||| |||| || |||| | |||| Sbjct 10298 GTAGGAGAGGAACCGCAGGAC-CAGAC-ATTTGGTTCATGCGCTTGGCTGAAAGGCCAGT 10355 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||| || |||||| ||| ||| ||||||||||||||||||||||| Sbjct 10356 GGCGCGAAGCCACTATCTGCAAGATAATGACTGAACGCCTCTAAGTCAGAATC 10408 >seq117 Length=26990 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||| ||| ||||| | || |||| | |||||| |||| || |||| | |||| Sbjct 13990 GTACGGGAGAAACCGTAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGCTGAAAGGCCAGT 14047 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||| |||||||||| ||| || ||||||||||||||||||||||| Sbjct 14048 GGCGCGAACCTACCATCTGAAAGATAGTGACTGAACGCCTCTAAGTCAGAATC 14100 >seq1 Length=4309324 Score = 78.8 bits (86), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 4 CGAGAGGAACCGC-GGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 || ||||||| || |||| |||| | |||||| ||| || ||| | ||||| Sbjct 183992 CGTGAGGAACAGCAGGAA--CAGAC-ATTTGGTTCACGCGCTTGGTTGAAAGGCCAGTGG 184048 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 184049 CGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 184099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819197571584