Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq117 221 4e-55 seq91 109 2e-21 >seq117 Length=26990 Score = 221 bits (244), Expect = 4e-55 Identities = 352/500 (70%), Gaps = 50/500 (10%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||||||| | || ||||||||||||| ||||||||| |||| Sbjct 16411 TATTTTTCGTCACTACCTCCCCGATCTGCGAGTGGGTAATTTGCGTGCCTGCTGCTTTCC 16352 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| Sbjct 16351 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGTGTCGAACCCTGATTCTCCGTTA 16292 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||| || || | |||||||||| |||||| | || |||| Sbjct 16291 ACCGTTGTCACCATGGTAAGCACGTAGCGTACCATCGAAGGTTGATGAGCTAGTCATTTC 16232 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA--- 279 || || | ||||||| | | || |||||| | ||||||| | ||| ||| Sbjct 16231 AAAGATTCGTCGCCGGTGCCGGACCGTGCGATCAGCATAGTTATTCGCATTCAGCAACCT 16172 Query 280 -----GGAGCC---CCGA-AG------GGCG-----TTGGTTTTTTATCTAATAAATAC- 318 ||| || || | || ||| |||||||| | |||||||||| | Sbjct 16171 TTCGCGGACCCAGACCAATAGATAGTCTGCGTCCGATTGGTTTTGT-TCTAATAAATGCG 16113 Query 319 -----ACCCCTTC--CGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 || | ||| || || | || ||| |||||||||| |||||| |||| | Sbjct 16112 CTCCGACGCGTTCAGCGCTACCGAGCTTCGAGGCACGTATTAGCTCCAGAATTTCCACAG 16053 Query 372 TTATCCATGTAGTAAGGTACTATCAAAT----AAACGATAACTGATTTAATGAGCCATTC 427 ||||||| || | || |||| | ||| | |||| | ||||||||||||| Sbjct 16052 TTATCCAAGT------GGAC-ATCAGTTTTGCGAACAGTGACTGCTGTAATGAGCCATTC 16000 Query 428 GCAGTTTCACTGT---ATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 || ||||| || | || ||| ||| || ||||||||||| | ||||| Sbjct 15999 GCGCCTTCACCGTTCAACAGTGTGC----GCTTGCACTTGCATGGCTTAGCCACTGAGAG 15944 Query 485 AAGCATATGACTACTGGCAG 504 |||||||||||||||||||| Sbjct 15943 AAGCATATGACTACTGGCAG 15924 >seq91 Length=47874 Score = 109 bits (120), Expect = 2e-21 Identities = 123/161 (76%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||||||||||||||||||||| |||| |||||||| || | | | | || ||| Sbjct 12699 GCATGTATTAGCTCTAGAATTTCCACAGTTATCCAAGT-GAACACCAGT-TCTTCCGAAC 12642 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 || |||| | ||||||||||||||| | ||||| || || | | ||| || | Sbjct 12641 AATGACTGCTGTAATGAGCCATTCGCGGCTTCACCGTTCAG-CGGTGTGCGCTTGCACTT 12583 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||| |||||||||||||||||||||||||||||| Sbjct 12582 GCGTGGCTTAGTCTTTGAGACAAGCATATGACTACTGGCAG 12542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510395378176