Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20suis_20[genbank_20GCA_5F000797535.1_202014-12-09] 306 sequences; 63,839,715 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq20 161 8e-35 seq5 138 9e-28 >seq20 Length=1136993 Score = 161 bits (178), Expect = 8e-35 Identities = 277/393 (70%), Gaps = 12/393 (3%) Strand=Plus/Plus Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 ||||| || | ||||| | || ||| | ||||| || || || ||||||||||| || Sbjct 122599 GAACGCTTTTCTCAGGAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCAAATA 122658 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG 61377 ||||| ||||| | |||||||| ||||| || | || || || |||||||| || Sbjct 122659 GCCATAGAGAACATTCACTCGGAAATGTATAGCCTCCTGATTGACACGTACATTCAAGAC 122718 Query 61378 CGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA 61437 ||||| ||| | || ||||||| || |||||||| || ||| || ||| ||| Sbjct 122719 GAAGCGGAGCGTTACCGCCTGTTCAACGCTATCGAGACCATTCCGTGCGTTAAGAAGAAG 122778 Query 61438 GCGGATTGGGC-CTTCAATTGGATCACCAGTACA--ACGGCTACATTTGGTGAACGATTG 61494 || |||||||| || | | |||||| | | ||| | | | |||| |||| ||| | Sbjct 122779 GCCGATTGGGCTCTACGA-TGGATCGC--GGACAAGAAGTCACCATTCAGTGATCGACTA 122835 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATT-TTTCAGTGGATCGTTT-GCCGCAATCTTTT 61552 | |||||||| | || || || |||| ||| | | | |||| || | ||||| | Sbjct 122836 GTAGCATTTGCCGCCGTTGAAGGCATATTCTTTTCGGGCA--GTTTCGCTTCGATCTTCT 122893 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | ||||||||||| |||||||| ||||| || || ||||||||| | || || || | Sbjct 122894 GGCTAAAGAAACGTGGTCTTATGCCAGGTCTCACTTTTAGCAATGAGCTCATCTCCCGAG 122953 Query 61613 ACGAGG--GCATGCATTGTGATTTTGCTGTTTT 61643 | |||| || ||||| | ||||| |||| Sbjct 122954 ATGAGGTACTATTCATTGCTTTGTTGCTTTTTT 122986 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 |||||||| || || || || |||||||| || || | || ||| | |||||| Sbjct 123094 GAGGCGGTCGTCATTGAGCAAGAGTTTCTGACCGAAGCACTTCCGGTCAACTTGATCGGC 123153 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGAT 61824 |||||||| | ||| |||| | || || || | || ||||| ||| | ||||| || Sbjct 123154 ATGAATTGCGAACTGATGTGCCGATACATAGAGTACGTGGCCGATCGTTTATTGGTTGAA 123213 Query 61825 TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCG 61884 |||| || ||| || ||| | | || || || || || ||||| ||||| ||| Sbjct 123214 TTGGACTGCAACAAGATATACAATTCTGAGAATCCGTTCGACTTTATGGAAATGATATCG 123273 Query 61885 CTGGATGGCAAGACGAATTTTTTCG--AGAAACGTGTAGGCGACTATCAA 61932 || || || ||||| ||||| |||| ||||| ||| ||||| |||||| Sbjct 123274 CTTGAAGGTAAGACCAATTTCTTCGAAAGAAAGGTG--GGCGAATATCAA 123321 >seq5 Length=2343098 Score = 138 bits (152), Expect = 9e-28 Identities = 311/477 (65%), Gaps = 58/477 (12%) Strand=Plus/Minus Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||| || || ||||||||||||||||| || |||| ||||| || ||||||||||| Sbjct 1058051 ATATTCTACTATTTCGGTGCACAGATTGGAACACTGTATAGTGCCTAAGTTCTGTTGATT 1057992 Query 66112 ACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 ||| | |||||| || || ||||||| |||| | |||||||| ||||| | ||| || Sbjct 1057991 CGACTTTCTATTGCAAGCGTCTTTGTACACCATGAAAGGAGTGCCAGTCTCGATTTGCGA 1057932 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC----CGTACGTACCGCCCTACCTT 66227 |||||| ||||| | |||||| | |||||||| ||| ||| || ||| || Sbjct 1057931 CTCAATTATGGCATACCAAAGTTGCTGCGCCTTCACTTTACGTCTGTAACGACCTTCCGC 1057872 Query 66228 TGCG-------------TTCGTAA---------------------------------TGT 66241 | || | ||||| | | Sbjct 1057871 TTCGTACCTACGGAATATACGTAATAGCAACACGATAAGACATCACAAGACAATAACTTT 1057812 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301 ||||| | || ||||| |||||||| || ||| || | || | || ||||| Sbjct 1057811 TCGTATAACTGGTCGAACTGATCACCCCAAACCTCGTGAAGCCCGGGGCTCTCATGTGGG 1057752 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 ||||||| ||||||||||||| ||| | ||| ||||| ||||| || |||||||| Sbjct 1057751 CACATCAAACACCAATCACCATCTGCTTCAATACGCCGCATGAATAGGTCTGGTATCCAA 1057692 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT-GCCGTG---ATTTTTGCGCAA 66417 || |||||||| | ||| | || || | || || | ||||| | ||||| Sbjct 1057691 AGCGCGTAGAACAAATCCCTGGCACGGTTTTCGTCCTTCCCCGTGTTCCTCTTTGC---- 1057636 Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474 || ||||| ||||| || || || ||||||||||||| ||| || || |||| ||| Sbjct 1057635 GTACAGGAAGTCAAAAATATCTGCGTGCCATGGTTCCAAGTATATAGCAAACGCGCC 1057579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566517319840