Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq1883 188 1e-45 >seq1883 Length=4789 Score = 188 bits (208), Expect = 1e-45 Identities = 230/312 (74%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 11 GTTATGTTTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGA-- 68 |||| | ||||||||||||||||| || || |||||| |||||| |||| |||| Sbjct 3846 GTTAAGCTTAGCGGATTTTCTCGGGAGTATGATTACCCACACTATCAGATTCCTCCGAGG 3787 Query 69 AGGACGTTCCATACTGTCAATCTCGACTCTTTCCGTGGATTTGCCTGCGGAAATCAACGT 128 ||||| ||| |||| |||| || ||| |||||||||||||| ||||| Sbjct 3786 AGGAC--TCCGTACTATCAAGTTCAGCTCGGATGGTGGATTTGCCTGCCATCCTCAACAC 3729 Query 129 CTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACG 188 |||||||||| ||| || ||||||| || |||| | | ||||| || |||| ||||| Sbjct 3728 CTACACTCTTCAACGGGGACTTCCGTCGCCCCGCGGTGGTTTCACTGCTCCGTCTCCACG 3669 Query 189 TCACCCTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGC 248 || ||| | ||| |||||||| ||||||| |||||||||| |||||||||||| Sbjct 3668 TCGCCCCATGCGGCAGTGACGGAATATTAACCGTCTCTGCCATCGCCATCGCCGTTCGGC 3609 Query 249 TGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTT 308 | | |||| ||||||||| |||| | | |||| || || | ||||||||| ||||| Sbjct 3608 TTAGACTTAGGACCCGACTGACCCCGGGCTGATTGGCATTGCCCGGGAAACCTTGGTCTT 3549 Query 309 TCGGCGAGGGGG 320 | ||| | ||| Sbjct 3548 ACAGCGGGAGGG 3537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959960102400