Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1883 194 3e-47 seq1870 188 1e-45 seq1599 176 9e-42 seq2084 127 4e-27 >seq1883 Length=4789 Score = 194 bits (214), Expect = 3e-47 Identities = 176/219 (80%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 119 GCGAGGTTAAGGG-CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC 177 |||||||| || | | | || | ||| ||||| ||||||||||||||| ||||||||| Sbjct 2843 GCGAGGTTGAGTGTCATGAGACACGT-AGCCGCAGTGAAAGCGAGCCTGAACAGGGCGCA 2901 Query 178 GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237 ||| |||| | ||||||||||||| ||||||||| | | |||| ||||||| ||| Sbjct 2902 CAGTCAGTGGGGGTAGACGCGAAACCAAGTGATCTACACTTGGCCAGGATGAAGTCCCGG 2961 Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297 |||| || |||||||| ||| ||| ||| |||||||||| || |||||| || | || Sbjct 2962 TAACACGGGATGGAGGTCCGCACCAATAAGCGTTGAAAAGCTTCTGGATGAGCCGAGTGT 3021 Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||| ||||||||||||||||||| ||| ||||||||||| Sbjct 3022 AGGAGTGAAAGGCCAATCAAACTTGGAGATAGCTCGTAC 3060 >seq1870 Length=4832 Score = 188 bits (208), Expect = 1e-45 Identities = 243/328 (74%), Gaps = 12/328 (4%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | |||||||| || ||||| || | | | Sbjct 3418 AGGGGAGTGAAATAGATCCTGAAACCGTGTGCCTACAACAAGTTAGAGCCC-GTTAATGG 3360 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCG-TCACCAGCGAGGTTAAG 129 |||| |||||||||||| | ||||| || ||||||| || | || ||||||||||| Sbjct 3359 GTGATAGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA--CGATTACTTGCGAGGTTAAG 3302 Query 130 GGCTTCAG--GCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GAGTTGGTG 186 || | | | | ||||| || ||||||||| || || ||||||| |||| ||| Sbjct 3301 ---TTGAAAAGACGG--AGCCGCAGCGAAAGCGAGTCTGAATAGGGCGAATGAGTAAGTG 3247 Query 187 GCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTG 246 | ||||| ||||||| ||||||||||||| | |||||||||| ||||||| || Sbjct 3246 GTCGTAGACCCGAAACCATGTGATCTACCCATGTCCAGGTTGAAGGTGCGGTAAAACGCA 3187 Query 247 ATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAA 306 |||||||||||||| |||||||||||| |||||| | |||||| || ||| Sbjct 3186 CTGGAGGACCGAACCCACGTACGTTGAAAAGTGCGGGGATGAGGTGTGGGTAGCGGAGAA 3127 Query 307 AGGCCAATCAAACTGGGAAATAGCTCGT 334 | |||| | |||| ||| |||||| || Sbjct 3126 ATTCCAAACGAACTTGGAGATAGCTGGT 3099 >seq1599 Length=6876 Score = 176 bits (194), Expect = 9e-42 Identities = 241/327 (74%), Gaps = 10/327 (3%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | |||||||| || ||||| || | | | Sbjct 3820 AGGGGAGTGAAATAGAACCTGAAACCGTGTGCCTACAACAAGTTCGAGCCC-GTTAATGG 3878 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA-GCGAGGTTAAG 129 |||| |||||||||||| | ||||| || ||||||| || | | ||||||||||| Sbjct 3879 GTGAGAGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA--CGATATGATGCGAGGTTAAG 3936 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGT-TGGTGG 187 | || || ||||| || |||| |||| ||||| |||||| | ||| | || Sbjct 3937 T--TGAAGAAACGG-AGCCGTAGGGAAACCGAGTCTTAATAGGGCGGCTTAGTATCATGT 3993 Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247 || ||||| ||||||| ||||| ||||||| ||||||| ||||| | ||||| | Sbjct 3994 CG-TAGACCCGAAACCATGTGACCTACCCATGAGCAGGGTGAAGGTGAGGTAAAACTCAC 4052 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||||| ||| ||| | |||||||||||| | |||||||| | |||||| || |||| Sbjct 4053 TGGAGGCCCGCACCAGGGCACGTTGAAAAGTGCTTGGATGACTTGTGGGTAGCGGAGAAA 4112 Query 308 GGCCAATCAAACTGGGAAATAGCTCGT 334 |||| | |||| ||| |||||| || Sbjct 4113 TTCCAAACGAACTTGGAGATAGCTGGT 4139 >seq2084 Length=3937 Score = 127 bits (140), Expect = 4e-27 Identities = 225/324 (69%), Gaps = 3/324 (1%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| || | |||||||||| |||| | || | | Sbjct 1789 AGGGGAGTGAAAAAGAACCTGAAACCCTGTGCCTACAAGCACCTAGAGC-GCGTCAATGT 1731 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| | || | ||||| | || | || |||| | | || |||| ||||||||| Sbjct 1730 GTGATAGGGTACTTTTTGTAGAACGGTCCGGCGAGCGATT-GTATGCAGCAAGGTTAAGG 1672 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 ||| ||| | | |||||||| ||||||||| | || |||||| ||||| Sbjct 1671 ACTTAAGGTCTGG-AGCCGAAGCGAAAGCGAGTTTGAAAAGGGCGTTAAGTTGCATATAA 1613 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | | | ||||||| |||| ||||||| | ||||||||||| | |||| |||| Sbjct 1612 TGGGCCCGAAACCGGGTGACCTACCCATGGTCAGGTTGAAGTGGAAGTAAAATTCCATGG 1553 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||||||||||| |||||||||| ||||||| | |||||| || |||| | Sbjct 1552 AGGACCGAACCGACCTCCGTTGAAAAGGCGGCGGATGAACTGTGGGTAGCGGAGAAATTC 1493 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 ||||| ||| ||| |||||| || Sbjct 1492 CAATCGAACCCGGAGATAGCTGGT 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972759570432