Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq2793 156 3e-36 seq2319 87.8 1e-15 seq2805 82.4 5e-14 seq1870 75.2 8e-12 seq2084 73.4 3e-11 >seq2793 Length=2112 Score = 156 bits (172), Expect = 3e-36 Identities = 109/124 (88%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 ||||| |||||||||||| |||||||||||||||||| || |||| ||||||| ||||| Sbjct 348 CCCTATGGTTACCTTGTTACGACTTCACCCCAGTCATAAACCACACCGTGGTAACCGCCC 407 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 || || ||||||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 408 TCAATAAAGTTAAGCTAGCTACTTCTGGTGCAATCCACTCCCATGGTGTGACGGGCGGTG 467 Query 135 TGTA 138 |||| Sbjct 468 TGTA 471 >seq2319 Length=3243 Score = 87.8 bits (96), Expect = 1e-15 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| |||||||||||||||| ||| || | | ||||||||| Sbjct 1208 TACGGCTACCTTGTTACGACTTCACCCCAGTCGCTTATCCCACCTTCGGCTGCGCCCTCC 1267 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 ||||| || || ||||| || || ||||||||||||||||||||||||||| Sbjct 1268 TTGCGGTTAGGCAACAGACTTCGGGTGTTACAAACTCCCATGGTGTGACGGGCGGTGTGT 1327 Query 138 A 138 | Sbjct 1328 A 1328 >seq2805 Length=2094 Score = 82.4 bits (90), Expect = 5e-14 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 19 ACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCC 78 |||| ||||||||| ||||||||||||| | || | | || | | ||||||||| Sbjct 1547 ACGGCTACCTTGTTACGACTTCACCCCAATTATCGAACCCACCTTCGGCCGCGCCCTCCT 1488 Query 79 GAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTA 138 ||||| ||||| ||||| || || |||| ||||||||||||||||||||||| Sbjct 1487 TTCGGTTAGGCTACGGACTTCGGGTGTTCCCGACTCTCATGGTGTGACGGGCGGTGTGTA 1428 >seq1870 Length=4832 Score = 75.2 bits (82), Expect = 8e-12 Identities = 89/121 (74%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||| |||| ||| || | | || |||| Sbjct 4216 TACGGCTACCTTGTTACGACTTCACCCCAATCATCTATCCCACCTTAGGCGGCTGGCTCC 4275 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 ||||||| ||| ||||| || || |||| | |||||||||||||||||||| Sbjct 4276 AAAAGGTTACCTCACCGACTTCGGGTGTTACAAACTCTCGTGGTGTGACGGGCGGTGTGT 4335 Query 138 A 138 | Sbjct 4336 A 4336 >seq2084 Length=3937 Score = 73.4 bits (80), Expect = 3e-11 Identities = 90/123 (73%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 16 CCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCT 75 ||||||| ||||||||| ||||||||||||| ||| | | | | | ||| ||| Sbjct 2833 CCTACGGCTACCTTGTTACGACTTCACCCCAATCACCAGTTTTACCTTCGGCGGCGTCCT 2892 Query 76 CCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGT 135 || ||||| ||||| ||||| | | || ||| |||||||||||||||||||| Sbjct 2893 CCTTGCGGTTAGACTACCGACTTCGGGTCCCCCCGGCTCTCATGGTGTGACGGGCGGTGT 2952 Query 136 GTA 138 ||| Sbjct 2953 GTA 2955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345586534560