Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3462 122 2e-25 >seq3462 Length=1263 Score = 122 bits (134), Expect = 2e-25 Identities = 180/251 (72%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCATG 131 |||||||||| ||||| |||| | |||| ||| ||| | |||| ||| ||||| Sbjct 889 TTTACTTTGAGAAAATGAGAGCGCTCAAGGCAAGCCGTAGTGCTTGAACCGTGGTGCATG 830 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT----CTAGGACCGCCGTAAT 187 ||||||| || | | | | | || ||||||||||||||| ||| || | ||| Sbjct 829 GAATAATGAAAGATGGCCT-CAGTGCTATTTTGTTGGTTTACGGCTATGAG----GCAAT 775 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| || || | ||||| | ||||| || ||||||||||||||||||| Sbjct 774 GATTAAAAGAGACTGACGGGGACATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATC 715 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 ||||| | | | ||||||||| || |||| |||||||||||||||| ||||| Sbjct 714 GCAGCAAGACGACCAATTGCGAAAGCATTTGTCAAGAATGTTTTCATTAATCA-AGAACG 656 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 655 AAAGTTAGAGG 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915161964288