Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2445 118 4e-24 seq2431 118 4e-24 seq2389 118 4e-24 seq1938 118 4e-24 seq1930 118 4e-24 seq1919 118 4e-24 seq1913 118 4e-24 seq1873 118 4e-24 seq1861 118 4e-24 seq1839 118 4e-24 seq1641 118 4e-24 seq1358 118 4e-24 seq2842 105 3e-20 >seq2445 Length=2866 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 261 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 320 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 321 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 373 >seq2431 Length=2899 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 2760 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 2701 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 2700 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 2648 >seq2389 Length=3027 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 1105 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 1164 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 1165 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 1217 Score = 105 bits (116), Expect = 3e-20 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||| | | || |||||| | || ||| ||| ||| | |||| |||||| Sbjct 99 CGAGTCGGGTTGCTCGAGAGTGCAGCCCAAAGCGGGTGGTGAATCCCACCTAAGGCTAAA 158 Query 99 TATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 || ||| | ||||||||||||| ||||||| | || ||||| ||||||| |||||| Sbjct 159 TAC-GGCTACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGA 217 Query 158 AAAGAGAGTTAAAAAGCACGTGAAA 182 | |||||||| || || |||||||| Sbjct 218 AGAGAGAGTTCAACAGGACGTGAAA 242 >seq1938 Length=4511 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 389 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 448 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 449 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 501 >seq1930 Length=4564 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 517 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 576 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 577 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 629 >seq1919 Length=4621 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 534 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 593 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 594 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 646 >seq1913 Length=4638 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 4007 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 3948 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 3947 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 3895 >seq1873 Length=4818 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 544 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 603 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 604 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 656 >seq1861 Length=4896 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 796 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 855 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 856 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 908 >seq1839 Length=5065 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 446 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 505 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 506 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 558 >seq1641 Length=6532 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 353 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 412 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 413 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 465 >seq1358 Length=9395 Score = 118 bits (130), Expect = 4e-24 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | Sbjct 344 ACCCGAAAGATGGTGAACTATGCATGAGCAGGACGAAGCCAGAGGAAACTCTGGTGGAAG 403 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||||| || |||||||||| ||| | | ||| | |||||||||| Sbjct 404 TTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGGCGA 456 >seq2842 Length=2044 Score = 105 bits (116), Expect = 3e-20 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||| | | || |||||| | || ||| ||| ||| | |||| |||||| Sbjct 198 CGAGTCGGGTTGCTCGAGAGTGCAGCCCAAAGCGGGTGGTGAATCCCACCTAAGGCTAAA 257 Query 99 TATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 || ||| | ||||||||||||| ||||||| | || ||||| ||||||| |||||| Sbjct 258 TAC-GGCTACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGA 316 Query 158 AAAGAGAGTTAAAAAGCACGTGAAA 182 | |||||||| || || |||||||| Sbjct 317 AGAGAGAGTTCAACAGGACGTGAAA 341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079910853800