Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1883 116 4e-24 seq2084 95.1 1e-17 seq1870 80.6 3e-13 seq1599 77.0 3e-12 >seq1883 Length=4789 Score = 116 bits (128), Expect = 4e-24 Identities = 134/177 (76%), Gaps = 5/177 (3%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 2254 GGCGGATGCCTAGGCTCACGGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCTTCGGG 2313 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC---CGATATATTGG 124 | ||| ||| |||||||| |||| |||||||||| ||||| | | | || Sbjct 2314 TAGGTGCAAATAACCTTTGATCCGAAGATTTCCGAATGGGACAACCTAGCCGTCTGAAGG 2373 Query 125 AGATATATCATAACGCTAGGCGTTAG-GCGAACGTGGGGAACTGAAACATCTAAGTA 180 | || | || || | ||||| || |||| |||||||||||||||| |||| Sbjct 2374 ACGGTTACTAGCAC-TTATGTGTTAGAGCTAACGCAGGGAACTGAAACATCTTAGTA 2429 >seq2084 Length=3937 Score = 95.1 bits (104), Expect = 1e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13 ATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGATTG 72 |||||| ||| || |||| ||| ||| ||||||||||||||||| ||||| |||||| Sbjct 2290 ATGCCTTGGCACTGGGAGCCGATGAAAGACGTGATAAGCTGCGATAAGCTTCGGGGAGCT 2231 Query 73 GCACATACGAATTGATCCGTAGATATCCGAATGGGGCAAC 112 ||| ||| | ||||||||| |||| || ||||| || ||| Sbjct 2230 GCAAATAAGCATTGATCCGGAGATTTCTGAATGAGGAAAC 2191 >seq1870 Length=4832 Score = 80.6 bits (88), Expect = 3e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||||||| ||| || |||| ||| |||||||| || | | ||| | ||| || Sbjct 3927 ACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACGGGACTAACACCGATATGCTTCG 3868 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATT 122 |||| | | || | |||||||| |||| ||||||||||| ||||| | || || Sbjct 3867 GGGAGCTGTAAGTAAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCCAACATCTT 3811 >seq1599 Length=6876 Score = 77.0 bits (84), Expect = 3e-12 Identities = 83/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||||||| ||| || | || ||| ||||||||||| | | ||||| ||| | Sbjct 3318 ACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTGACTAACGACGAAATGCTTTG 3377 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 |||| | | | || | |||||| |||| ||||||||||| |||||| Sbjct 3378 GGGAGTTGTAAGTAAACAGTGATCCAGAGATGTCCGAATGGGGGAACCCG 3427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476780803436