Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2793 399 6e-109 seq2805 318 2e-84 seq1599 291 2e-76 seq2319 289 7e-76 seq2084 289 7e-76 seq2280 232 2e-58 seq1883 185 2e-44 >seq2793 Length=2112 Score = 399 bits (442), Expect = 6e-109 Identities = 329/400 (82%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1369 AGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTT 1310 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||||| ||||||||||||| | |||||||||| ||| | |||||||||| Sbjct 1309 AATCGGAATAACTGGGCGTAAAGGGCATGCAGGCGGTTCATCAAGTAGGATGTGAAATCC 1250 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 ||||||| |||||||||| |||| |||| ||||||||| | ||| ||| | Sbjct 1249 CCGGGCTCAACCTGGGAACAGCATACTAAACTGGTGGACTAGAGTATTGCAGGGGGAGAC 1190 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 ||||||||| ||||||| ||| ||||||||||||| |||| ||||||||| ||||||||| Sbjct 1189 GGAATTCCAGGTGTAGCGGTGGAATGCGTAGATATCTGGAAGAACACCAAAGGCGAAGGC 1130 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 || | |||||| || |||||||||||| |||||||||||| |||||||||||||||| Sbjct 1129 AGTCTCCTGGGCAAATACTGACGCTCATATGCGAAAGCGTGGGTAGCAAACAGGATTAGA 1070 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTGG 369 ||||||||||||||||||| |||||||| |||| ||| | | ||| || | || || Sbjct 1069 TACCCTGGTAGTCCACGCCGTAAACGATGTCAATTAGGAGCTTGGGCAATAGT--CTGGG 1012 Query 370 TAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || ||||||||| || ||||||||||||||| ||| Sbjct 1011 TTCCGCAGCTAACGCAATAAATTGACCGCCTGGGGAGTAC 972 >seq2805 Length=2094 Score = 318 bits (352), Expect = 2e-84 Identities = 316/408 (77%), Gaps = 1/408 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| |||| |||| |||||||||||||||||||||||||||||||||||||| || Sbjct 524 TACCTGGAGAAAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGC 583 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||||||| |||| |||||||| |||||| | | | || ||| | | ||| ||| ||| Sbjct 584 AAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGTGTAGCCGGGAGGGCAAGTCAGATGT 643 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| |||||| ||| | ||| |||||||| ||| | | || |||| | ||| Sbjct 644 GAAATCCACGGGCTCAACTCGTGAACTGCATTTGAAACTACTCTTCTTGAGTATCGGAGA 703 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || |||||||| ||||||| ||||||||||||||||| |||||||||||| ||| Sbjct 704 GGCAATCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 763 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| | |||| | ||||||| | | || |||||||||||||||||||||| Sbjct 764 CGAAGGCGGATTGCTGGACGACAACTGACGGTGAGGCGCGAAAGCGTGGGGAGCAAACAG 823 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGT-TGGGGATTTAC 361 ||||||||||||||||||||||||| |||||||| ||||| ||| ||||| | || Sbjct 824 GATTAGATACCCTGGTAGTCCACGCTGTAAACGATGAATACTAGGTGTGCGGGGACTGAC 883 Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| || || || |||| | |||| || |||||||| ||| Sbjct 884 CCCCTGCGTGCCGCAGTTAACACAATAAGTATTCCACCTGGGGAGTAC 931 >seq1599 Length=6876 Score = 291 bits (322), Expect = 2e-76 Identities = 303/394 (77%), Gaps = 9/394 (2%) Strand=Plus/Plus Query 21 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTA 80 |||||||||||||||||||||||||||||||||||||| | |||||| |||| ||| Sbjct 1988 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTCCCGAGCGTTGTCCGGATTTA 2047 Query 81 CTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAAC 140 ||||||||||||| |||||||||||| |||| | | || ||| | |||||||| Sbjct 2048 TTGGGCGTAAAGCGAGCGCAGGCGGTTTAATAAGTCTGAAGTTAAAGGCAGTGGCTTAAC 2107 Query 141 CTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGG---GTGGAATTCC 197 | | | || || | |||| ||| ||||| |||| |||| |||||||||| Sbjct 2108 CATTGT-TCGCTTTGGAAACTGTTAAACTTGAGTG---CAGAAGGGGAGAGTGGAATTCC 2163 Query 198 ACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCT 257 | ||||||| ||||||||||||||||| |||||||||||| ||||||| || || | || Sbjct 2164 ATGTGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCGGTGGCGAAAGCGGCTCTCT 2223 Query 258 GGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGG 317 || | ||||||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 2224 GGTCTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGG 2283 Query 318 TAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC--TTCCTTGGTAACGT 375 ||||||||||| |||||| | |||| |||| || || | ||| || || Sbjct 2284 TAGTCCACGCCGTAAACGCTGAGTGCTAGGTGTTAGGCCCTTTCCGGGGCTTAGTGCCGC 2343 Query 376 AGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||||||||| | ||| ||||||||||| ||| Sbjct 2344 AGCTAACGCATTAAGCACTCCGCCTGGGGAGTAC 2377 >seq2319 Length=3243 Score = 289 bits (320), Expect = 7e-76 Identities = 301/391 (77%), Gaps = 3/391 (1%) Strand=Plus/Minus Query 21 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTA 80 |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| Sbjct 2209 CGGCTAACTACGTGCCAGCAGCCGCGGTAAAACGTAGGTCACAAGCGTTGTCCGGAATTA 2150 Query 81 CTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAAC 140 ||||| |||||| | |||||||||| | ||| | ||||||||| ||||| ||| Sbjct 2149 CTGGGTGTAAAGGGAGCGCAGGCGGGAGGACAAGTTGGAAGTGAAATCCATGGGCTCAAC 2090 Query 141 CTGGGAATTGCATTTGTGACTGCACGACTAGAGT-GTGTCAGAGGGGGGTGGAATTCCAC 199 | ||| ||| || |||| || |||| ||| |||||| || |||||||| Sbjct 2089 CCATGAACTGCTTTCAAAACTGTTTTTCTTGAGTAGTG-CAGAGGTAGGCGGAATTCCCG 2031 Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 ||||||| ||| ||||||||||||| |||||||||||| |||||||||| ||| |||| Sbjct 2030 GTGTAGCGGTGGAATGCGTAGATATCGGGAGGAACACCAGTGGCGAAGGCGGCCTACTGG 1971 Query 260 GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 319 | ||||||||| | || |||||| ||||| |||||||||||||||||||||||||| Sbjct 1970 GCACCAACTGACGCTGAGGCTCGAAAGTGTGGGTAGCAAACAGGATTAGATACCCTGGTA 1911 Query 320 GTCCACGCCCTAAACGATATCAACTAGTTGTTGG-GGATTTACTTCCTTGGTAACGTAGC 378 |||||| || |||||||| ||||| |||||| ||||| || | | || || || Sbjct 1910 GTCCACACCGTAAACGATGATTACTAGGTGTTGGAGGATTGACCCCTTCAGTGCCGCAGT 1851 Query 379 TAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||| | |||| || |||||||| ||| Sbjct 1850 TAACACAATAAGTAATCCACCTGGGGAGTAC 1820 >seq2084 Length=3937 Score = 289 bits (320), Expect = 7e-76 Identities = 304/396 (77%), Gaps = 13/396 (3%) Strand=Plus/Minus Query 21 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTA 80 |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| Sbjct 3837 CGGCTAACTACGTGCCAGCAGCCGCGGTAAAACGTAGGTCACAAGCGTTGTCCGGAATTA 3778 Query 81 CTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGT-----GTGAAATCCCCGGGC 135 ||||| |||||| | |||||||||| |||||| || ||||||||| |||| Sbjct 3777 CTGGGTGTAAAGGGAGCGCAGGCGGG-----AAGACAAGTTGGAAGTGAAATCCATGGGC 3723 Query 136 TTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGT-GTGTCAGAGGGGGGTGGAAT 194 | |||| ||| ||| || |||| || |||| ||| |||||| || ||||| Sbjct 3722 TCAACCCATGAACTGCTTTCAAAACTGTTTTTCTTGAGTAGTG-CAGAGGTAGGCGGAAT 3664 Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCC 254 ||| ||||||| ||| ||||||||||||| |||||||||||| |||||||||| ||| Sbjct 3663 TCCCGGTGTAGCGGTGGAATGCGTAGATATCGGGAGGAACACCAGTGGCGAAGGCGGCCT 3604 Query 255 CCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 314 ||||| ||||||||| | || |||||| ||||| ||||||||||||||||||||| Sbjct 3603 ACTGGGCACCAACTGACGCTGAGGCTCGAAAGTGTGGGTAGCAAACAGGATTAGATACCC 3544 Query 315 TGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG-GGATTTACTTCCTTGGTAAC 373 ||||||||||| || |||||||| ||||| |||||| ||||| || | | || | Sbjct 3543 TGGTAGTCCACACCGTAAACGATGATTACTAGGTGTTGGAGGATTGACCCCTTCAGTGCC 3484 Query 374 GTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || |||| | |||| || |||||||| ||| Sbjct 3483 GCAGTTAACACAATAAGTAATCCACCTGGGGAGTAC 3448 >seq2280 Length=3366 Score = 232 bits (256), Expect = 2e-58 Identities = 191/233 (82%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 |||| |||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 233 AAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCG 174 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 || ||| ||||||||||||| |||||||||||| |||| | | ||||||| |||| || Sbjct 173 GATTTATTGGGCGTAAAGCGAGCGCAGGCGGTTTCTTAAGTCTGATGTGAAAGCCCCCGG 114 Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAAT 194 || |||| |||| |||| | |||| ||| ||||| ||||| | ||||||| Sbjct 113 CTCAACCGGGGAGGGTCATTGGAAACTGGGAAACTTGAGTGCAGAAGAGGAGAGTGGAAT 54 Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAG 247 |||| ||||||| ||||||||||||||||| ||||||||||||| |||||||| Sbjct 53 TCCATGTGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCAGTGGCGAAG 1 >seq1883 Length=4789 Score = 185 bits (204), Expect = 2e-44 Identities = 242/335 (72%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||| | ||||||| ||||||||| | |||||||||||||||||||||||| | ||| | Sbjct 843 TACCTTATGAATAAGGACCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGAAGGTCC 902 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| |||| ||| |||| ||||| | ||| |||| | | |||| | ||| Sbjct 903 GGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGGAGATTAAGCGTGTTGT 962 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||| ||| ||| | | | |||| |||| || |||| | | Sbjct 963 GAAATGTAGATGCTCAACATCTGCACTGCAGCGCGAACTGGTTTCCTTGAGTACGCACAA 1022 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 | ||| ||||||| ||||||| ||||||||| ||||||| || |||| || || | Sbjct 1023 AGTGGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTG 1082 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||||| | |||| ||||||||| | || |||||| | ||| | | ||||| Sbjct 1083 CGAAGGCAGCTCACTGGAGCGCAACTGACGCTGAAGCTCGAAAGTGCGGGTATCGAACAG 1142 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| | | |||||||| Sbjct 1143 GATTAGATACCCTGGTAGTCCGCACGGTAAACGAT 1177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289546404224