Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq1883 217 2e-54 seq2084 122 9e-26 seq1870 114 1e-23 seq2838 111 2e-22 seq1599 98.7 1e-18 >seq1883 Length=4789 Score = 217 bits (240), Expect = 2e-54 Identities = 155/175 (89%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||||||||||||| ||||||| ||| ||||||||||| ||||| || ||| ||||| Sbjct 3864 CGCAAACGGACACACGTGGTCGGGTAGAACATACTAAGGCG-TTGAGAGATTCATGGTTA 3922 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 |||||||||||||| ||||||||||||||||||||||||||||| | || | || Sbjct 3923 AGGAACTAGGCAAATTGACCCTGTAACTTCGGGATAAAGGGTCC---TCGTGATGAGCGA 3979 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3980 -GGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCAAA 4033 >seq2084 Length=3937 Score = 122 bits (134), Expect = 9e-26 Identities = 133/175 (76%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| |||| || ||| || ||||||| | | ||| |||| Sbjct 743 CGCAAACCGACACAGGTAGGTAGGAAGAAGATTCTAAGGCCAACGGGAGAAGGGTTGTTA 684 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| |||||| |||||||||||| || |||| | ||||| |||| Sbjct 683 AGGAACTCGGCAAATTGACCCCGTAACTTCGGGAGAAGGGGTGCT---CCAGAGATGGA- 628 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | |||||||||| || ||| ||||||||||| |||||||||||| ||||| || Sbjct 627 -GCCGCAGAGAATCGGCCCAAGCAACTGTTTACCAAAAACACAGGTTTGTGCTAA 574 >seq1870 Length=4832 Score = 114 bits (126), Expect = 1e-23 Identities = 133/176 (76%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| |||||| ||||||| | || || |||||| | ||| ||| || || || Sbjct 2304 CGCAAACCGACACAGGTAGTCGAGGAGAGAATCCTAAGGTGAGCGAGAGAACTCTCG-TT 2246 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140 |||||||| |||||| |||||| |||||||||||| || |||| | | | || | Sbjct 2245 AAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTGATC---TAACGAT 2189 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||||||| ||| || |||||||| |||||||||||| || ||| || Sbjct 2188 CAGCCGCAGTGAATAGGCCCAAGCGACTGTTTATCAAAAACACAGGTCTCTGCAAA 2133 >seq2838 Length=2052 Score = 111 bits (122), Expect = 2e-22 Identities = 130/175 (74%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| |||| | | || || ||||||| | | ||| |||| Sbjct 466 CGCAAACCGACACAGGTAGATGAGGAGAGAATCCTAAGGCCAACGGGAGAAGGGTTGTTA 525 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| |||||| |||||||||| | || ||| ||| |||| || Sbjct 526 AGGAACTCGGCAAATTGACCCCGTAACTTCGGAAGAAGGGGAGCCTC----GAAA---GA 578 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| ||||||| ||| ||||||||||| |||||||||||| || ||| || Sbjct 579 GGCCGCAGTGAATAGGCCCAAGCAACTGTTTACCAAAAACACAGGTCTATGCTAA 633 >seq1599 Length=6876 Score = 98.7 bits (108), Expect = 1e-18 Identities = 129/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| |||||| ||||||| | || || || ||| | ||| ||| || || || Sbjct 4929 CGCAAACCGACACAGGTAGTCGAGGCGAGTAGCCTCAGGTGAGCGAGAGAACTCTCG-TT 4987 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140 |||||||| |||||| || ||| |||||||||||| || ||| | | || | Sbjct 4988 AAGGAACTCGGCAAAATGGCCCCGTAACTTCGGGAGAAGGGGCGCTGGCTTAGC----GT 5043 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||||||| ||| ||||||||||| ||||||||||| || ||| || Sbjct 5044 CAGCCGCAGTGAATAGGCCCAAGCAACTGTTTATCAAAAACACAGCTCTCTGCTAA 5099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531178613224