Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1870 109 5e-22 seq1599 100 3e-19 seq2838 91.5 1e-16 seq1883 86.0 6e-15 seq2084 77.0 3e-12 >seq1870 Length=4832 Score = 109 bits (120), Expect = 5e-22 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| |||||||||||| |||||||||| ||||||||| |||||| |||||||| Sbjct 2174 AGGCCCAAGCGACTGTTTATCAAAAACACAGGTCTCTGCAAAATCGAAAGATGACGTATA 2115 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| ||||||||||||||||| |||||||||| Sbjct 2114 GGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAA 2082 >seq1599 Length=6876 Score = 100 bits (110), Expect = 3e-19 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| || ||||||||| ||||||||||| |||||| || || ||| || ||||| Sbjct 5058 AGGCCCAAGCAACTGTTTATCAAAAACACAGCTCTCTGCTAAATCGTAAGATGATGTATA 5117 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| |||||||||||||||||| |||||||||| Sbjct 5118 GGGGGTGACGCCTGCCCGGTGCTGGAAGGTTAA 5150 >seq2838 Length=2052 Score = 91.5 bits (100), Expect = 1e-16 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| || |||||||| |||||||||| || ||| || |||||| |||||||| Sbjct 592 AGGCCCAAGCAACTGTTTACCAAAAACACAGGTCTATGCTAAATCGAAAGATGACGTATA 651 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||||||||||||||||||| Sbjct 652 TGGGCTGACGCCTGCCCGGTGCCGGAAGGTTAA 684 >seq1883 Length=4789 Score = 86.0 bits (94), Expect = 6e-15 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 || |||||||| |||||||||| || ||||||| |||||| || ||||| | ||| Sbjct 4000 GCAACTGTTTAACAAAAACACAGGGCTGTGCAAACTCGAAAGATGAGGTATACAGCCTGA 4059 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | ||||||||||||||||||||||| Sbjct 4060 CACCTGCCCGGTGCCGGAAGGTTAA 4084 >seq2084 Length=3937 Score = 77.0 bits (84), Expect = 3e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 || |||||||| |||||||||| | ||| || |||||| |||||||| | ||| Sbjct 607 GCAACTGTTTACCAAAAACACAGGTTTGTGCTAAATCGAAAGATGACGTATACGAGCTGA 548 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||||| |||||||||| Sbjct 547 CGCCTGCCCGGTGCTGGAAGGTTAA 523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476780803436