Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1870 466 4e-129 seq1599 448 1e-123 seq2084 421 1e-115 seq2838 417 2e-114 seq1883 329 7e-88 seq2532 185 2e-44 >seq1870 Length=4832 Score = 466 bits (516), Expect = 4e-129 Identities = 323/365 (88%), Gaps = 1/365 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || | || ||||||||||||||| | ||||||||||||||||| Sbjct 1894 TAACCTGCATCTTCACAGGTACTAAAATTTCACCGAGTCTCTCGTTGAGACAGTGCCCAA 1953 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1954 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 2013 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||||||||||| | ||| ||||| || | |||| Sbjct 2014 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCGTACCTTCGCTTACGCTAAG 2073 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||| ||||||||||||||||||||||||||||||| ||||||| || |||| ||| | Sbjct 2074 CACTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACGTCATCTTTCGATT 2133 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC-A 299 | ||||| ||||||||||||| ||||||||||||||||||||||| ||||||| || Sbjct 2134 TTGCAGAGACCTGTGTTTTTGATAAACAGTCGCTTGGGCCTATTCACTGCGGCTGATCGT 2193 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 |||| |||||||||||||| ||||||||||||||||||||||||||||||||| | || Sbjct 2194 TAGATCAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAG 2253 Query 360 TTCTC 364 ||||| Sbjct 2254 TTCTC 2258 >seq1599 Length=6876 Score = 448 bits (496), Expect = 1e-123 Identities = 320/365 (88%), Gaps = 2/365 (1%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || | || ||||||||||||||| | ||||||||||||||||| Sbjct 5338 TAACCTGCATCTTCACAGGTACTAAAATTTCACCGAGTCTCTCGTTGAGACAGTGCCCAA 5279 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5278 ATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 5219 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||||||||||| | ||||| ||||| | |||| Sbjct 5218 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCACACCTTCGCTAATGCTAAG 5159 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||||||||||||||||||||| | |||||||||| |||| ||| | Sbjct 5158 CGCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCACCCCCTATACATCATCTTACGATT 5099 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC-A 299 ||||||| | ||||||||||| |||||||| |||||||||||||| |||||| ||| | Sbjct 5098 TAGCAGAGAGCTGTGTTTTTGATAAACAGTTGCTTGGGCCTATTCACTGCGG-CTGACGC 5040 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 || | || ||||||||||| ||||||||||| ||||||||||||||||||||| | || Sbjct 5039 TAAGCCAGCGCCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAGTTCCTTAACGAGAG 4980 Query 360 TTCTC 364 ||||| Sbjct 4979 TTCTC 4975 >seq2084 Length=3937 Score = 421 bits (466), Expect = 1e-115 Identities = 315/366 (86%), Gaps = 14/366 (4%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || |||||||||||||||| | ||||||||| ||| || |||||||||||||||||| Sbjct 344 TAACCGGCATCTTCACCGGTACTACAATTTCGCCGGGTAGGCTGTTGAGACAGTGCCCAA 403 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 404 ATCGTTACGCCATTCGTGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGA 463 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 ||||||||||||||||||||||| |||||||||| |||| ||| |||| || Sbjct 464 CCGTTATAGTTACGGCCGCCGTTCACTGGGGCTTCGATTCAATGC-----TTGC----AC 514 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| ||||||||||||||||||||||||||||||||| ||||| || |||| ||| | Sbjct 515 ATCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCGTATACGTCATCTTTCGATT 574 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC-CTGTC- 298 ||||| |||||||||||||||||||||||| ||||||||| |||||||||||| | || Sbjct 575 TAGCACAAACCTGTGTTTTTGGTAAACAGTTGCTTGGGCCGATTCTCTGCGGCTCCATCT 634 Query 299 ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATA 358 | || |||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 635 CTGGA---GCACCCCTTCTCCCGAAGTTACGGGGTCAATTTGCCGAGTTCCTTAACAACC 691 Query 359 GTTCTC 364 ||||| Sbjct 692 CTTCTC 697 >seq2838 Length=2052 Score = 417 bits (462), Expect = 2e-114 Identities = 311/359 (87%), Gaps = 5/359 (1%) Strand=Plus/Minus Query 6 GGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGT 65 |||||||||||| | | ||||||||| ||| | ||| ||||||||||||||||| | Sbjct 865 GGCATCTTCACCAGTACTACAATTTCGCCGGGCGGGCTGTCGAGACAGTGCCCAAATCAT 806 Query 66 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 125 |||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 805 TACGCCATTCGTGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTT 746 Query 126 ATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATC 185 ||||||||||||||||||||| ||||||||| |||| ||||||| |||| || ||| || Sbjct 745 ATAGTTACGGCCGCCGTTTACCGGGGCTTAAATTCAATGCTTCG-TTGC-CTGACATCTC 688 Query 186 CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245 | ||||||||||| ||||||||||||||||||| | ||||| || |||| ||| |||||| Sbjct 687 CTCTTAACCTTCCGGCACCGGGCAGGCGTCAGCCCATATACGTCATCTTTCGATTTAGCA 628 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACA 305 | |||||||||||||||||||||| |||||||||||||| ||||||||| | | | | Sbjct 627 TAGACCTGTGTTTTTGGTAAACAGTTGCTTGGGCCTATTCACTGCGGCCTCT-TTCG--A 571 Query 306 GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||| |||||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct 570 GGCTCCCCTTCTTCCGAAGTTACGGGGTCAATTTGCCGAGTTCCTTAACAACCCTTCTC 512 >seq1883 Length=4789 Score = 329 bits (364), Expect = 7e-88 Identities = 291/362 (80%), Gaps = 15/362 (4%) Strand=Plus/Minus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | ||||||||||| ||| || |||||||||| | || ||| Sbjct 4271 CGGCATCTTCACCGATACTACAATTTCACTGAGCTCATGGTTGAGACAGCGTCCGGATCA 4212 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4211 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 4152 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTC-------- 176 |||||||||||||||||||||| ||||||| | |||| |||||| ||| Sbjct 4151 TATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAATGCTTC-----CTCCCAAAGAG 4097 Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236 | ||| ||| ||||||||||| |||||||||||| ||||| ||||| || |||| | Sbjct 4096 TGACATCTCCTCTTAACCTTCCGGCACCGGGCAGGTGTCAGGCTGTATACCTCATCTTTC 4037 Query 237 GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC-CT 295 || || ||| | |||||||||||| |||||||| || ||| ||||||||||||| | | Sbjct 4036 GAGTTTGCACAGCCCTGTGTTTTTGTTAAACAGTTGCCTGGACCTATTCTCTGCGCCTCG 3977 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 |||| || | |||| || |||| ||||||| |||||| |||||| ||||||||||| Sbjct 3976 CTCAT-CACGAGGACCCTTTATCCCGAAGTTACAGGGTCAATTTGCCTAGTTCCTTAACC 3918 Query 356 AT 357 || Sbjct 3917 AT 3916 >seq2532 Length=2654 Score = 185 bits (204), Expect = 2e-44 Identities = 125/140 (89%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || |||||||||||||||| | ||||||||| ||| || |||||||||| | ||| Sbjct 140 TAACCGGCATCTTCACCGGTACTACAATTTCGCCGGGTGGGCAGTTGAGACAGCGTCCAG 81 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 ATCGTTACACCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 21 Query 121 CCGTTATAGTTACGGCCGCC 140 |||||||||||||||||||| Sbjct 20 CCGTTATAGTTACGGCCGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062355846656