Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1870 639 0.0 seq1599 580 3e-163 seq2084 518 1e-144 seq2805 515 1e-143 seq2319 515 1e-143 seq2793 495 1e-137 seq1883 318 2e-84 >seq1870 Length=4832 Score = 639 bits (708), Expect = 0.0 Identities = 429/476 (90%), Gaps = 2/476 (0%) Strand=Plus/Minus Query 21 TCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAAC 80 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 4817 TCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAAC 4758 Query 81 GCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCT 140 |||||||||||||||| |||||||||||| ||||| |||||||||||||| || ||||| Sbjct 4757 GCGAAGAACCTTACCAGGTCTTGACATCCTTTGACCACTCTAGAGATAGAGCTT-CCCCT 4699 Query 141 TCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGG 200 ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 4698 TCGGGGG-CAAAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGG 4640 Query 201 GTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTC 260 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 4639 GTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTGCCATCATTTAGTTGGGCACTC 4580 Query 261 TAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCC 320 || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 4579 TAGCGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCC 4520 Query 321 CTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGA 380 ||||||| |||||||||||||||||||||||| | ||||| | | ||||| ||||| Sbjct 4519 CTTATGACCTGGGCTACACACGTGCTACAATGGGAAGTACAACGAGTCGCGAAGTCGCGA 4460 Query 381 GGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATA 440 || |||| |||| | ||||| | |||||||||||||||||| |||||||||| ||| | Sbjct 4459 GGCTAAGCTAATCTCTTAAAGCTTCTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACA 4400 Query 441 TGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCG 496 |||||| ||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct 4399 TGAAGCCGGAATCGCTAGTAATCGCGGATCAGCACGCCGCGGTGAATACGTTCCCG 4344 >seq1599 Length=6876 Score = 580 bits (642), Expect = 3e-163 Identities = 430/498 (86%), Gaps = 6/498 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2375 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 2434 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTC-TGACCCCT 119 |||||||||||||||||||||||||||||||||||| ||||||||||| || | Sbjct 2435 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCCGATGCTATTT 2494 Query 120 CTAGAGATAGAG-GTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 ||||||||||| ||||| ||||| | | |||||||||| ||||||||||||||| Sbjct 2495 CTAGAGATAGAAAGTTTC---TTCGGAACATCG-GTGACAGGTGGTGCATGGTTGTCGTC 2550 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 2551 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTATTGTTAGTT 2610 Query 239 GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 ||||||||| |||||||||||||| |||||||||| | ||||||||||||||||||| Sbjct 2611 GCCATCATTCAGTTGGGCACTCTAGCGAGACTGCCGGTAATAAACCGGAGGAAGGTGGGG 2670 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | ||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 2671 ATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGTTGGT 2730 Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||| | | || | | | || | |||||||||| | ||||| ||||||||||||| Sbjct 2731 ACAACGAGTCGCAAGTCGGTGACGGCAAGCAAATCTCTTAAAGCCAATCTCAGTTCGGAT 2790 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCT 478 ||||| |||||||||| ||| |||||| ||||||||||||||||| |||||||| || Sbjct 2791 TGTAGGCTGCAACTCGCCTACATGAAGTCGGAATCGCTAGTAATCGCGGATCAGCACGCC 2850 Query 479 ACGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 2851 GCGGTGAATACGTTCCCG 2868 >seq2084 Length=3937 Score = 518 bits (574), Expect = 1e-144 Identities = 416/497 (84%), Gaps = 10/497 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || Sbjct 3450 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCAGTGGAGTAT 3391 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||||| |||||||||||| ||| | Sbjct 3390 GTGGTTTAATTCGACGCAACGCGAAGAACCTTACCAAGTCTTGACATCCTGCGACGCACA 3331 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||| ||| |||| ||||| ||||| || |||||||| ||||||||||||||||| Sbjct 3330 TAGAAATATGTGTTT--CCTTC--GGGACGCAGAGACAGGTGGTGCATGGTTGTCGTCAG 3275 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| | Sbjct 3274 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATGGTCAGTTAC 3215 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 | | | | | ||||| |||||||| ||||||| |||||||||||||||| Sbjct 3214 TA-CGCAA----GAGGACTCTGGCCAGACTGCCGTTGACAAAACGGAGGAAGGTGGGGAT 3160 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG-ACAATA 359 |||||||||||||||||||| |||||| ||||||||||||||| ||||||||| | | Sbjct 3159 GACGTCAAATCATCATGCCCTTTATGACTTGGGCTACACACGTACTACAATGGCGTTAAA 3100 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||||| | ||| | |||||||||| |||||| | || ||| || ||||||||| | Sbjct 3099 CAAAGAGAAGCAAGACCGCGAGGTGGAGCAAAACTCAGAAACAACGTCCCAGTTCGGACT 3040 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 | || |||||||||| || | |||| ||||| |||||||||||| ||||||||||| | Sbjct 3039 GCAGGCTGCAACTCGCCTGCACGAAGTCGGAATTGCTAGTAATCGTGGATCAGCATGCCA 2980 Query 480 CGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 2979 CGGTGAATACGTTCCCG 2963 >seq2805 Length=2094 Score = 515 bits (570), Expect = 1e-143 Identities = 419/501 (84%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 929 TACGATCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGATTAT 988 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||||||||||||||||||||||||| ||||||||||| | | Sbjct 989 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGGCTTGACATCCTACTAACGAAG 1048 Query 121 TAGAGATA---GAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177 |||||||| ||| | |||||||||| | || |||||||| |||||||||||||| Sbjct 1049 TAGAGATACATTAGG--TGCCCTTCGGGGAAAGTAGAGACAGGTGGTGCATGGTTGTCGT 1106 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1107 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTATTGTTAGT 1166 Query 238 TGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| | | | | |||||||| |||||||| ||||||| |||||||||||||| Sbjct 1167 TGCTA-CGCAA----GAGCACTCTAGCGAGACTGCCGTTGACAAAACGGAGGAAGGTGGG 1221 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 ||||||||||||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 1222 GACGACGTCAAATCATCATGCCCCTTATGTCCTGGGCTACACACGTAATACAATGG-CGG 1280 Query 358 T--ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 | ||| |||| ||| || |||||||| |||||| ||| |||| | || ||||||| Sbjct 1281 TCAACAGAGGGAAGCAAAGCCGCGAGGCAGAGCAAACCCCCAAAAGCCG-TCCCAGTTCG 1339 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCAT 475 |||||||| |||||||||| || |||||| ||||||||||||||||| ||||||||| Sbjct 1340 GATTGTAGGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATCGCGGATCAGCAT 1399 Query 476 GCTACGGTGAATACGTTCCCG 496 || ||||||||||||||||| Sbjct 1400 GCCGCGGTGAATACGTTCCCG 1420 >seq2319 Length=3243 Score = 515 bits (570), Expect = 1e-143 Identities = 416/497 (84%), Gaps = 11/497 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || Sbjct 1822 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCAGTGGAGTAT 1763 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||||| |||||||||||| ||| | Sbjct 1762 GTGGTTTAATTCGACGCAACGCGAAGAACCTTACCAAGTCTTGACATCCTGCGACGCACA 1703 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||| ||| |||| ||||| ||||| || |||||||| ||||||||||||||||| Sbjct 1702 TAGAAATATGTGTTT--CCTTC--GGGACGCAGAGACAGGTGGTGCATGGTTGTCGTCAG 1647 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1646 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGCCATTAGTTGC 1587 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 | | | | ||||||||| ||| || ||||| |||||||||||||||| Sbjct 1586 TA-CGCAA----GAGCACTCTAATGGGACCGCTACCGACAAGGTGGAGGAAGGTGGGGAC 1532 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT-A 359 ||||||||||||||||||||||||||| |||||||||||||| |||||||| || | | Sbjct 1531 GACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTAATACAATGGTCATTAA 1472 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 || |||| ||| || |||||||| |||||| ||| ||| || ||||||||||||| Sbjct 1471 CAGAGGGAAGCAAAGCCGCGAGGCAGAGCAAAACCC-CAAAAATGATCTCAGTTCGGATC 1413 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 | || ||||||| || || ||||| |||||| ||||||||||| ||||||||||||| Sbjct 1412 GCAGGCTGCAACCCGCCTGCGTGAAGTTGGAATTGCTAGTAATCGCAGATCAGCATGCTG 1353 Query 480 CGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 1352 CGGTGAATACGTTCCCG 1336 >seq2793 Length=2112 Score = 495 bits (548), Expect = 1e-137 Identities = 412/499 (83%), Gaps = 6/499 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 974 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 915 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCC-CT 119 |||||||||||||| |||||||||||||||||||| ||||||||||| | || || | Sbjct 914 GTGGTTTAATTCGACGCAACGCGAAGAACCTTACCTGATCTTGACATCGTAAGAACCTCA 855 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 || || |||| | || |||||| || | |||||||| ||||||| |||||||| Sbjct 854 CTGAAGGGTGAGGGTGCC--TTCGGGA-ACTTACAGACAGGTGCTGCATGGCTGTCGTCA 798 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 797 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCTTTGTTG 738 Query 240 CCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| | | ||| ||| |||| ||| ||||||| ||||||||| ||||||||| || Sbjct 737 CCAGCGGGTAAAGCCGGGAACTCAAAGGAGACTGCCAGTGACAAACTGGAGGAAGGCAGG 678 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| |||||||| |||||| | | ||||||||||||||||||||||| Sbjct 677 GATGACGTCAAGTCATCATGGCCCTTACGGTCAGGGCTACACACGTGCTACAATGGGGCG 618 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||| |||| | ||| |||||||||| || | |||| |||| || |||||||| Sbjct 617 TACAGAGGGAAACGATACCGCGAGGTGGAGTGGAACCCAAAAAGCGTCCCTAAGTTCGGA 558 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 ||| |||||||||||||||| |||||| ||||||||||||||||| | ||||| ||| Sbjct 557 TTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGCAAATCAGAATGT 498 Query 478 TACGGTGAATACGTTCCCG 496 | ||||||||||||||||| Sbjct 497 TGCGGTGAATACGTTCCCG 479 >seq1883 Length=4789 Score = 318 bits (352), Expect = 2e-84 Identities = 377/502 (75%), Gaps = 13/502 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| | |||| | |||||||||||||||||||||||| ||||||||||||| ||| ||| Sbjct 1245 TACGCCGGCAACGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAACAT 1304 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTG-ACCCCT 119 |||||||||||||| | |||||| |||||||||| ||||| | | | | | Sbjct 1305 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAATTGCAGAGGAAGGAT 1364 Query 120 CTAGAGATA--GAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177 | |||| | || | |||||||||| | |||| ||||| |||||||||||||| Sbjct 1365 TTGGAGACAATGACG----CCCTTCGGGGT-CTCTGTGA-AGGTGCTGCATGGTTGTCGT 1418 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 ||||||||| |||||| ||| || |||||| || |||||||||||||| | |||||| Sbjct 1419 CAGCTCGTGCCGTGAGGTGTCGGCTTAAGTGCCATAACGAGCGCAACCCCTCTCCTTAGT 1478 Query 238 TGCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 |||||||| ||||| |||||||||| | |||||| | | |||||||||| Sbjct 1479 TGCCATCAGGTTAAGCTGGGCACTCTGGGGACACTGCCACCGTAAGGTGTGAGGAAGGTG 1538 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 |||| |||||||||||| || | |||||| | |||||||||||||| |||||||| Sbjct 1539 GGGATGACGTCAAATCAGCACGGCCCTTACGTCCGGGGCTACACACGTGTTACAATGGCA 1598 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||| || | | || | | | ||||| || ||||| |||||||||| Sbjct 1599 GGTACAGAGAGATGGTCCCTTGCAAAATGGATCAAAT-CCTTAAAGCCTGTCTCAGTTCG 1657 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CA 474 || || ||||||||| |||| | ||||||||| ||||||||||||| ||||| || Sbjct 1658 GACTGGGGTCTGCAACCCGACCCCACGAAGCTGGATTCGCTAGTAATCGCGCATCAGCCA 1717 Query 475 TGCTACGGTGAATACGTTCCCG 496 || ||||||||||||||||| Sbjct 1718 TGGCGCGGTGAATACGTTCCCG 1739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503937493760