Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3462 150 3e-34 seq137 80.6 4e-13 >seq3462 Length=1263 Score = 150 bits (166), Expect = 3e-34 Identities = 109/126 (87%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||| ||| | |||||||||||||||||||||| ||||||||||| ||||||| Sbjct 282 GCTAGTTAGTAGGCCAGAGTCTCGTTCGTTATCGGAATTAGCCAGACAAATCGCTCCACC 341 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCT 260 ||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||| Sbjct 342 AACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTCTTGATCTGTCAA 401 Query 261 CCCTCG 266 ||||| Sbjct 402 TCCTCG 407 Score = 91.5 bits (100), Expect = 2e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 5 CGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 64 || || | ||||||||||||| ||||||| |||| | ||||||||||||||||||||||| Sbjct 63 CGCTGACGCCGTCAGTGTAGCACGCGTGCAGCCCCGTACATCTAAGGGCATCACAGACCT 122 Query 65 GTTATTGC 72 |||||||| Sbjct 123 GTTATTGC 130 >seq137 Length=117562 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||||| || |||||| ||||| ||||||||||| ||||||||| ||||||||||| ||| Sbjct 44968 TCTCGATCATTATCGCAATTAGCCAGACAAATCGTTCCACCAACCAAGAACGGCCACGCA 45027 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | | | | ||||||| |||||| || | ||||| Sbjct 45028 CGGCTGACTACTGAATCAAAAAAGAGACCTCGACCTGTC 45066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796767919836