Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1870 306 7e-81 seq1599 282 8e-74 seq2838 196 9e-48 seq2532 196 9e-48 seq1883 152 1e-34 seq2084 147 4e-33 >seq1870 Length=4832 Score = 306 bits (338), Expect = 7e-81 Identities = 248/297 (84%), Gaps = 5/297 (2%) Strand=Plus/Minus Query 45 GAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCGG-ACGACGTATAAC 103 ||| ||||| ||||||||||||| ||| ||| ||||||| | || || ||| Sbjct 1779 GAGGCGCTGGTGGGATACTACCCTTGTGTTATGACCACTCTAACCCGCACCAC---TAAT 1723 Query 104 CGTTGACGG-GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTA 162 ||| | || ||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 1722 CGTGGTGGGAGACAGTGTCAGATGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTA 1663 Query 163 ACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCA 222 |||||||||||||||| | ||||||| ||| |||||| ||| |||| |||| ||||||| Sbjct 1662 ACGGAGGCGCCCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCGCAGAGTGTAAAGGCA 1603 Query 223 AAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGAT 282 ||||| | |||||||||| ||| |||||| ||||||||||||||||||||||| |||| Sbjct 1602 CAAGGGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGGACGAAAGTCGGGCTTAGTGAT 1543 Query 283 CCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||| | | |||||| |||| |||||| ||||||||||||||||||||||||| Sbjct 1542 CCGGTGGTTCCGCATGGAAGGGCCATCGCTCAACGGATAAAAGCTACCCTGGGGATA 1486 >seq1599 Length=6876 Score = 282 bits (312), Expect = 8e-74 Identities = 241/296 (81%), Gaps = 1/296 (0%) Strand=Plus/Plus Query 44 GGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCGGACGACGTATAAC 103 |||| || |||||||||||||||| ||| ||| | ||||||| | ||| ||| Sbjct 5452 GGAGGCGTTGTTGGGATACTACCCTTGTGTTATGGCTACTCTAACCTAGATAGGTA-AAC 5510 Query 104 CGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAA 163 | | | ||||||||| | ||||||||||||||||||||||||||||| ||| |||| Sbjct 5511 CCTATCGGAGACAGTGTCTGACGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAA 5570 Query 164 CGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAA 223 ||||||||||||||| | ||||||| ||| |||||| ||| |||| |||| ||||| | Sbjct 5571 CGGAGGCGCCCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCGCAGAGTGTAAAGGTAT 5630 Query 224 AAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATC 283 ||||| | |||||||||| | | ||| || ||||||||||||||||||||||| ||||| Sbjct 5631 AAGGGAGCTTGACTGCGAGAGCTACAACTCGAGCAGGGACGAAAGTCGGGCTTAGTGATC 5690 Query 284 CGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| ||| | | |||||| |||| |||||| ||||||||||||||||||||||||| Sbjct 5691 CGGTGGTTCCGCATGGAAGGGCCATCGCTCAACGGATAAAAGCTACCCTGGGGATA 5746 >seq2838 Length=2052 Score = 196 bits (216), Expect = 9e-48 Identities = 182/230 (79%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1051 GGGACACTGTTAGACGGGCAGTTTGACTGGGGCGGTCGCCTCCAAAAGAGTAACGGAGGC 1110 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 || ||||| | | ||||| ||| ||||| | ||| |||| ||| ||| || | | Sbjct 1111 GCTCAAAGGTTCGTTCAGCACGGACGGAAATCGTGCATTGAGTGTAAACGCATAAACGAG 1170 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 | ||||||| ||| | ||| ||||| |||||||| || ||| |||||||| ||| Sbjct 1171 CCTAACTGCGAGACCGACGGGTCGAGCAGTAACGAAAGTTGGAGTTAGTGATCCGGTGGT 1230 Query 291 -GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| ||||| ||| |||||| ||||||||||||||||||||||||| Sbjct 1231 ATGTGAGTGGAAATGCCATCGCTCAACGGATAAAAGCTACCCTGGGGATA 1280 >seq2532 Length=2654 Score = 196 bits (216), Expect = 9e-48 Identities = 232/312 (74%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACC 89 |||||||| | |||| | | ||||||||| | | | ||| || |||||||| Sbjct 240 ACGCCAGTGTATGCGGAGTCACCCTTGGGATACCGCTCTTAGAGTACTGAGATTCTAACC 299 Query 90 GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGC 149 | | ||| | ||| | |||||| |||||| |||||||||||||||||||||||| Sbjct 300 TGCGGCCGTGAATCCGGTCGGGGGACATTGTCAGGTGGGCAGTTTGACTGGGGCGGTCGC 359 Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATG-CGC 208 |||| ||| ||||||||||||| ||||| | |||||| || ||||||| || | | Sbjct 360 CTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTAGCTCAGCACGGTCGGAAACCGTGCCTC 419 Query 209 ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268 |||| ||| ||||||| | | ||||||| | | | | ||||| ||||||| Sbjct 420 TGAGTGTAAACGCAAAAGCTAGCCTAACTGCGAGGCTGACGGGCCGAGCAGTAACGAAAG 479 Query 269 TCGGGCTTAATGATCCGGCGGT-GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCT 327 | || ||| |||||||||||| ||||||||| |||||||||| ||||||||||||| Sbjct 480 TTGGAGTTAGTGATCCGGCGGTATGTGAATGGAAATGCCGTCGCTCAACGGATAAAAGCT 539 Query 328 ACCCTGGGGATA 339 |||||||||||| Sbjct 540 ACCCTGGGGATA 551 >seq1883 Length=4789 Score = 152 bits (168), Expect = 1e-34 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||||||||||| |||||||||| |||| ||||||||||| |||||| | |||| Sbjct 4459 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGCGTAACGGAGGCTTCCAAAGGTGCCCT 4518 Query 186 CAGCTTGGATGGAAACCATGCGCACAG--TGCAAAGGCAAAAGGGTGTTTGACTGCGACA 243 | | | | ||| |||| | || || ||||| |||| ||||| | ||||||| || Sbjct 4519 CGGGTCGATTGGTAACCGACCTCAAAGAGTGCAATGGCATAAGGGCGCTTGACTGGGAGG 4578 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 | || | | |||||| | |||| | |||| || ||||||||||| || |||||| Sbjct 4579 CAGACATGCCGAGCAGGCAGGAAACTGGGGCATAGTGATCCGGCGGATGTGTATGGAAAC 4638 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||||||| | ||||||||| ||| | ||||||| Sbjct 4639 TCCGTCGCTCAAAGGATAAAAGGTACTCCGGGGATA 4674 >seq2084 Length=3937 Score = 147 bits (162), Expect = 4e-33 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 54 TTGGGATACTACCCCTGTTGTATTGGATTTCTAACCGGACGACGTATAACCGTTGACGGG 113 ||||||||| |||| || | ||| ||||||||| | | | | | | | | ||| Sbjct 220 TTGGGATACCACCCTTGGATTGCTGGGTTTCTAACCTGCGGCCATGAATCTGGTCGGGGG 161 Query 114 ACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCC 173 ||| ||| || ||||||||||||||||||||||||||||| ||| |||| ||||||||| Sbjct 160 ACACTGTTAGGCGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAAGTAGCGGAGGCGCT 101 Query 174 CAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTT 233 ||||| | |||||| |||||||||| ||||| |||| ||| | | ||| || Sbjct 100 CAAAGCTTGGCTCAGCATGGATGGAAATCATGCAATGAGTGTAAACGTATAAGCCAAGTT 41 Query 234 GACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGG 272 |||||||| ||| | ||| |||||| |||||||| || Sbjct 40 GACTGCGAGACCGACGGGTCGAGCAGGTACGAAAGTAGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982359171456