Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1883 224 1e-56 seq2532 156 5e-36 seq1870 156 5e-36 seq1599 156 5e-36 seq2084 141 1e-31 seq2838 132 5e-29 >seq1883 Length=4789 Score = 224 bits (248), Expect = 1e-56 Identities = 138/151 (91%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4300 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 4241 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 |||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 4240 AGCTCATGGTTGAGACAGCGTCCGGATCATTACACCATTCGTGCAGGTCGGAACTTACCC 4181 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 4180 GACAAGGAATTTCGCTACCTTAGGACCGTTA 4150 >seq2532 Length=2654 Score = 156 bits (172), Expect = 5e-36 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| ||||||||| |||||||||||||| |||||||||||| | | Sbjct 164 GGGGTCTTTCCGTCTTGCCGCGGGTAACCGGCATCTTCACCGGTACTACAATTTCGCCGG 105 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | |||||||||| |||||||||||||| |||||||||||||||| Sbjct 104 GTGGGCAGTTGAGACAGCGTCCAGATCGTTACACCATTCGTGCGGGTCGGAACTTACCCG 45 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 44 ACAAGGAATTTCGCTACCTTAGGACCGTTA 15 >seq1870 Length=4832 Score = 156 bits (172), Expect = 5e-36 Identities = 139/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| ||||| |||||||||| | |||||||||| | ||||| |||||||| || Sbjct 1870 GGGGTCTTTCCGTCCTGTCGCGGGTAACCTGCATCTTCACAGGTACTAAAATTTCACCGA 1929 Query 84 G-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | ||| || ||||||||| ||| || ||||||| ||||||||||||||| Sbjct 1930 GTCTCTCG-TTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCC 1988 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1989 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 2048 >seq1599 Length=6876 Score = 156 bits (172), Expect = 5e-36 Identities = 139/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| ||||| |||||||||| | |||||||||| | ||||| |||||||| || Sbjct 5362 GGGGTCTTTCCGTCCTGTCGCGGGTAACCTGCATCTTCACAGGTACTAAAATTTCACCGA 5303 Query 84 G-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | ||| || ||||||||| ||| || ||||||| ||||||||||||||| Sbjct 5302 GTCTCTCG-TTGAGACAGTGCCCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCC 5244 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 5243 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 5184 >seq2084 Length=3937 Score = 141 bits (156), Expect = 1e-31 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| | |||||||| |||||||||||||| |||||||||||| | | Sbjct 320 GGGGTCTTTCCGTCTAGTTGCGGGTAACCGGCATCTTCACCGGTACTACAATTTCGCCGG 379 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | |||||||||| ||| |||||||||| |||| ||||||||| | Sbjct 380 GTAGGCTGTTGAGACAGTGCCCAAATCGTTACGCCATTCGTGCGGGTCAGAACTTACCTG 439 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 440 ACAAGGAATTTCGCTACCTTAGGACCGTTA 469 >seq2838 Length=2052 Score = 132 bits (146), Expect = 5e-29 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| | |||||||| |||||||||||| |||||||||||| | | Sbjct 894 GGGGTCTTTCCGTCTAGTTGCGGGTAACTGGCATCTTCACCAGTACTACAATTTCGCCGG 835 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | || ||||||| ||| |||||||||| |||| ||||||||| | Sbjct 834 GCGGGCTGTCGAGACAGTGCCCAAATCATTACGCCATTCGTGCGGGTCAGAACTTACCTG 775 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 774 ACAAGGAATTTCGCTACCTTAGGACCGTTA 745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547177969044