Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2793 329 7e-88 seq2319 293 5e-77 seq927 262 8e-68 seq1599 217 3e-54 seq2280 215 1e-53 seq1883 192 1e-46 seq2805 188 2e-45 >seq2793 Length=2112 Score = 329 bits (364), Expect = 7e-88 Identities = 290/361 (80%), Gaps = 18/361 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| |||||||||||||| ||||| ||||| |||| || Sbjct 1407 CTTTACAACCCGAAGGCCTTCTT-CACACACGCGGCAT-GGCTGCATCAGAGTTTCCTCC 1464 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1465 ATTGTGCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAA 1524 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || ||||||||||| |||||||| |||||||| Sbjct 1525 TGTGGCTGATCATCCTCTCAGACCAGCTAGAGATCGTCGCCTAGGTGAGCCTTTACCTCA 1584 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 || |||||||||||| | ||| |||||||||||| | | || ||| Sbjct 1585 CCTACTAGCTAATCCCGTTTGGGCACATCTGATAGCGAA------------TCGCTTCTT 1632 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || ||| ||| ||||||||||||||| ||||||| | ||| |||||| ||| ||| Sbjct 1633 TCACCCTGAGGCTGTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCTCTATCAG 1692 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC----TCAAGAGAAGCAAGCTTCTC 356 | || |||| | ||||||||||||||||| ||| |||||| |||||||||| || Sbjct 1693 GTAGTTTCCCAAATCTTACTCACCCGTCCGCCACTCGTCATCAAGAAAAGCAAGCTTTTC 1752 Query 357 T 357 | Sbjct 1753 T 1753 >seq2319 Length=3243 Score = 293 bits (324), Expect = 5e-77 Identities = 274/340 (81%), Gaps = 9/340 (3%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||||||||||||||| | | |||||||| | | ||| |||||| |||| |||| Sbjct 2256 TTTACAATCCGAAGACCTTCTTCCTC-CACGCGGCGTCG-CTGCATCAGGGTTTCCCCCA 2313 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 2314 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 2373 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| |||||||||||||||| ||| ||||||||| Sbjct 2374 GTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGCCTTGGTGGGCCGTTACCTCAC 2433 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | |||| ||||| | |||| | || | || ||| | Sbjct 2434 CAACTAGCTAATCGGACGCGAGGC-CATCTCAAAGCGGATTGCTCCTTTTCCCTCTGTAT 2492 Query 241 TCTCCCGTA--GGA--CGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTA 296 | | ||| | | | |||||||||||||| || |||||| || |||||||||| || Sbjct 2493 CATGCGGTACTGTAATCTTATGCGGTATTAGCATCTGTTTCCAAATGTTATCCCCCTCTG 2552 Query 297 CCAGGCAGATTCCT-AGGCATTACTCACCCGTCCGCCGCT 335 |||||| || || | || ||||||||||||||||| || Sbjct 2553 AAAGGCAGGTTGCTCACGCGTTACTCACCCGTCCGCCACT 2592 >seq927 Length=17258 Score = 262 bits (290), Expect = 8e-68 Identities = 215/259 (83%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTAC 150 |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || Sbjct 17258 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAG 17199 Query 151 GGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCT 210 |||||||||||| |||||||| ||||| |||| |||||||||||| | || ||| |||| Sbjct 17198 GGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCCCATCTGGGCACATCC 17139 Query 211 GATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACG-TATGCGGTATTAGCG 269 ||| || |||||||||||||||| |||| | | |||| |||||||||||||| Sbjct 17138 GATGGCAAGAGGCCCGAAGGTCCCCCTCTTT-GGTCTTGCGACGTTATGCGGTATTAGCT 17080 Query 270 TCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCC 329 |||||||| |||||||||| | | ||||||| |||| || |||||||||||||||| Sbjct 17079 ACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCC 17020 Query 330 GCCGCTCTCAAGAGAAGCA 348 ||| ||| || |||||| Sbjct 17019 GCCACTCGTCAGCGAAGCA 17001 >seq1599 Length=6876 Score = 217 bits (240), Expect = 3e-54 Identities = 258/342 (75%), Gaps = 16/342 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||| ||||||| |||||||| ||| |||||||| ||| || | ||||| || | ||| Sbjct 1916 CTTTACGATCCGAAAACCTTCTT-CACTCACGCGGCGTTG-CTCGGTCAGGGTTGCCCCC 1859 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| | || |||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 1858 ATTGCCGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 1799 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | | ||| |||||||| | | || | |||||||||||||| ||| ||||| || Sbjct 1798 TGTGGCCGTTCACCCTCTCAGGTCGGCTATGTATCGTCGCCTTGGTAGGCCCTTACCCCA 1739 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGC--CCGAAGGTCCCCTGC 238 ||||||||||||| | || ||| ||||| ||| | | || | | | | | Sbjct 1738 CCAACTAGCTAATACAACGCAGGTCCATCTACTAGTG--ATGCATTTGCATCTTTCAAG- 1682 Query 239 TTTCTCCCGT------AGGAC--GTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCC 290 | ||| | | | || |||||||||||||| ||||||| | |||||||| Sbjct 1681 TATCTAACATGTGTTAAATACTGTTATGCGGTATTAGCTATCGTTTCCAATAGTTATCCC 1622 Query 291 CCACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGC 331 || ||| |||||| || |||| || |||||||||||| ||| Sbjct 1621 CCGCTAGTAGGCAGGTTACCTACGCGTTACTCACCCGTTCGC 1580 >seq2280 Length=3366 Score = 215 bits (238), Expect = 1e-53 Identities = 257/341 (75%), Gaps = 16/341 (5%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| ||||||| |||||||| ||| |||||||| ||| || | ||||| || | |||| Sbjct 300 TTTACGATCCGAAAACCTTCTT-CACTCACGCGGCGTTG-CTCGGTCAGGGTTGCCCCCA 357 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| | || |||||| ||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 358 TTGCCGAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 417 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| | | || | |||||||||||||| ||| ||||| ||| Sbjct 418 GTGGCCGTTCACCCTCTCAGGTCGGCTATGTATCGTCGCCTTGGTAGGCCCTTACCCCAC 477 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGC--CCGAAGGTCCCCTGCT 239 |||||||||||| | || ||| ||||| ||| | | || | | | | | | Sbjct 478 CAACTAGCTAATACAACGCAGGTCCATCTACTAGTG--ATGCATTTGCATCTTTCAAG-T 534 Query 240 TTCTCCCGT------AGGAC--GTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCC 291 ||| | | | || |||||||||||||| ||||||| | ||||||||| Sbjct 535 ATCTAACATGTGTTAAATACTGTTATGCGGTATTAGCTATCGTTTCCAATAGTTATCCCC 594 Query 292 CACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGC 331 | ||| |||||| || |||| || |||||||||||| ||| Sbjct 595 CGCTAGTAGGCAGGTTACCTACGCGTTACTCACCCGTTCGC 635 >seq1883 Length=4789 Score = 192 bits (212), Expect = 1e-46 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 38 TTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAG 97 |||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 760 TTGGCTGGTTCAGGCTCTCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAG 701 Query 98 TCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGT 157 | |||||||||||||||||||| |||| || | |||||||||| | ||| |||||| Sbjct 700 TTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTACTGATCGT 641 Query 158 CGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 |||||||||| ||| ||||| | ||||| |||||||| ||| Sbjct 640 CGCCTTGGTGGGCCGTTACCCCGCCAACAAGCTAATCAGAC 600 >seq2805 Length=2094 Score = 188 bits (208), Expect = 2e-45 Identities = 212/276 (77%), Gaps = 17/276 (6%) Strand=Plus/Minus Query 73 TCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCA 132 |||||||||||||||||||||||||||||| |||| ||||||| ||| |||| | | ||| Sbjct 337 TCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGTTCA 278 Query 133 TCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAA 192 |||||||| || | ||| |||||||||||||||| ||| ||||| | |||||||||||| Sbjct 277 ACCTCTCAGTCCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAA 218 Query 193 TCCGAC-CTAGGCTCATCTGATAGCGCAA-------GGCCCGAAGGTCCCCTGCTTTCTC 244 || ||| | |||| ||||| |||| | ||| ||| | | ||| | Sbjct 217 TCAGACGCGAGGC-CATCTTGAAGCGATAAATCTTTGGCATAAAGAT--CATGC---GAC 164 Query 245 CCGTAGGACGT-ATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCA 303 || || | ||| ||||||||||||| ||||||| | ||| |||||| || | ||||| Sbjct 163 CCCTATG-CGTCATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCTCTTCAAGGCA 105 Query 304 GATTCCT-AGGCATTACTCACCCGTCCGCCGCTCTC 338 | ||||| | || ||||||||||||||||| || || Sbjct 104 GGTTCCTCACGCGTTACTCACCCGTCCGCCACTTTC 69 Score = 165 bits (182), Expect = 2e-38 Identities = 134/160 (84%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| ||||| ||||||| | |||||||| ||| |||| ||||| |||| |||| Sbjct 492 TTTACAACCCGAAAGCCTTCTTCCTT-CACGCGGCGTTG-CTGGGTCAGGGTTTCCCCCA 435 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| | Sbjct 434 TTGCCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAAT 375 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCC 161 ||| | | ||| |||||||| || | ||| ||||||| || Sbjct 374 GTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGTCTCC 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071955447680