Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq1498 118 2e-24 >seq1498 Length=7792 Score = 118 bits (130), Expect = 2e-24 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||||||||| ||||||||||| | || |||||||| || ||||||| ||||| || || Sbjct 3863 GCCCGGTGCTGGCGCTTCTTCGACCACTTTCTGGTGGCGGCGTTGCATGGAGCAGTCACG 3922 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 || |||| | ||| |||| |||||| ||||| | |||||| || | || ||||| || Sbjct 3923 TTCCGCCAGATAGATAGCGTTGCCCTGACCGTCAGCCAGTACCTGAATCTCGACGTGGCG 3982 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAA 221 || || |||||| || |||| ||| ||||| ||||| ||| Sbjct 3983 AGGATTTTCCAGGTATTTCTCCATGTAAACCATATCGTTGCTGAA 4027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735970367720