Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1870 262 1e-67 seq1599 217 4e-54 seq2084 203 8e-50 seq2319 158 3e-36 >seq1870 Length=4832 Score = 262 bits (290), Expect = 1e-67 Identities = 301/392 (77%), Gaps = 11/392 (3%) Strand=Plus/Plus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| || |||||||||||||||| || ||||| ||||| ||||||| | Sbjct 3157 TTTTCAACGTACGTGGGTTCGGTCCTCCAGTGCGTT-TTACCGCACCTT-CAACCTGGAC 3214 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACT-AGACGCCCTAGTAAGA 148 || || |||||| | ||||| |||||||| || | ||| | ||||||| | ||| Sbjct 3215 ATGGG-TAGATCACATGGTTT-CGGGTCTACGACC-ACTTACTCATTCGCCCTATTCAGA 3271 Query 149 CTCGCTTTTCGCTACGCCTCCC-CTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCT 207 |||||||| |||| || |||| || ||| | | | | || | | | ||| |||| Sbjct 3272 CTCGCTTT-CGCTGCGGCTCCGTCTTTTCAACTTAACCTCGCAAGTAATCGTAACTCGCC 3330 Query 208 GACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGC 267 | |||| ||||||||| |||| ||||||| || | ||||| ||| ||||| || Sbjct 3331 GGTTCATTCTACAAAAGGCACGCTATCACCCATTAACG--GGCTCTAACTTGTTGTAGGC 3388 Query 268 ATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACG 327 | |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| Sbjct 3389 ACACGGTTTCAGGATCTATTTCACTCCCCT-TCCGGGGTGCTTTTCACCTTTCCCTCACG 3447 Query 328 GTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATAT 387 ||||| ||||||||||||||| | | ||||||||||||||| |||||||| ||| || Sbjct 3448 GTACTGGTTCACTATCGGTCACTAGGGAGTATTTAGCCTTGGGAGATGGTCCTCCCGGAT 3507 Query 388 TCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || ||| | || |||||| |||| | ||||| Sbjct 3508 TCCGACGGAATTCCTCGTGTTCCGCCGTACTC 3539 >seq1599 Length=6876 Score = 217 bits (240), Expect = 4e-54 Identities = 282/377 (75%), Gaps = 11/377 (3%) Strand=Plus/Minus Query 45 GGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104 ||| ||| |||||||| ||| ||||| ||||| || ||||| ||| || ||| || | Sbjct 4066 GGTGCGGGCCTCCAGTGAGTT-TTACCTCACCTT-CACCCTGCTCATGGG-TAGGTCACA 4010 Query 105 CGGTTTTCGGGTCTATTTCCCAGCGACTA-GACGCCCTAGTAAGACTCGCTTTTCGCTAC 163 ||||| |||||||| | | |||| | ||||||| ||||||||| ||| | |||| Sbjct 4009 TGGTTT-CGGGTCTACGACAT-GATACTAAGCCGCCCTATTAAGACTCGGTTTCC-CTAC 3953 Query 164 GCCTCCCCTA-TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAA 222 | |||| | ||| | | | | || | | ||| |||| | |||| |||||| Sbjct 3952 GGCTCCGTTTCTTCAACTTAACCTCGCATCATATCGTAACTCGCCGGTTCATTCTACAAA 3893 Query 223 AGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGAT 282 ||| |||| ||||||| || | ||||| ||| ||||| ||| ||||||||||| | Sbjct 3892 AGGCACGCTCTCACCCATTAACG--GGCTCGAACTTGTTGTAGGCACACGGTTTCAGGTT 3835 Query 283 CTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTAT 342 |||||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||| Sbjct 3834 CTATTTCACTCCCCTC-CCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTAT 3776 Query 343 CGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCT 402 |||||| | ||||||||| |||| |||||||| |||| |||| ||| | ||||| Sbjct 3775 CGGTCACTAGAGAGTATTTAGGGTTGGGAGATGGTCCTCCCAGATTCCGACGAGATTTCT 3716 Query 403 CGTGCTCCGTCCTACTC 419 |||| || | ||||| Sbjct 3715 CGTGTCTCGCCGTACTC 3699 >seq2084 Length=3937 Score = 203 bits (224), Expect = 8e-50 Identities = 297/403 (74%), Gaps = 19/403 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| |||| ||||| |||||| ||||||||||||||||| | | | || Sbjct 1508 CCACAGTTCAT-CCGCCGCCTTTT-CAACGGAGGTCGGTTCGGTCCTCCA--TGGAATTT 1563 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | | ||||||||| |||| || ||| || |||||||| |||| | ||| || Sbjct 1564 TACTTCCACTTCAACCTGACCATGGG-TAGGTCACCCGGTTT-CGGGCCCATTATAT-GC 1620 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCT--ATTCGGTTAAG 183 ||| ||||||| | | ||||||||| |||| || |||| ||| | || |||| Sbjct 1621 AACTTAACGCCCTTTTCAAACTCGCTTT-CGCTTCGGCTCCAGACCTTAAGTCC-TTAAC 1678 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || | | ||| |||| | || || ||||||| |||| | |||| || | Sbjct 1679 CTT-GCTGCATACAATCGCTCGCCGGACCGTTCTACAAAAAGTACCCTATCACACATTGA 1737 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | | ||| |||||||| ||| | ||||||||| ||| ||||||||||||| |||| Sbjct 1738 CGCG--CTCTAGGTGCTTGTAGGCACAGGGTTTCAGGTTCTTTTTCACTCCCCTC-CCGG 1794 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||| |||||| ||||||| |||| |||||| | | |||||||||| | ||||||||||| Sbjct 1795 GGTGCTTTTCACCTTTCCTTCACAGTACTA-TACGCTATCGGTCACTGGGTAGTATTTAG 1853 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTG 406 ||||||| |||||||||||| ||| ||| | ||||| |||| Sbjct 1854 GGTTGGAGGGTGGTCCCCCCATCTTCCGACCAGGTTTCACGTG 1896 >seq2319 Length=3243 Score = 158 bits (174), Expect = 3e-36 Identities = 131/155 (85%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 |||||||| ||| | ||||||||| ||| ||||||||||||| |||||||||||||| || Sbjct 113 TGCTTGTAAGCACAAGGTTTCAGGTTCT-TTTCACTCCCCTC-CCGGGGTTCTTTTCACC 170 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 ||||| |||| |||||| | | |||||||||| | ||||||||||| |||||||||||| Sbjct 171 TTTCCTTCACAGTACTA-TACGCTATCGGTCACTGGGTAGTATTTAGGCTTGGAGGATGG 229 Query 377 TCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCG 411 ||||||| ||||| || ||||| |||| |||| Sbjct 230 TCCCCCCGTATTCCCACCGGGTTTCACGTG-TCCG 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241548399104