Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2319 379 4e-103 seq2805 302 9e-80 seq2793 217 3e-54 seq2280 205 2e-50 seq1599 205 2e-50 seq1883 185 2e-44 seq927 102 2e-19 >seq2319 Length=3243 Score = 379 bits (420), Expect = 4e-103 Identities = 271/309 (88%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2287 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 2346 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2347 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 2406 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||||||| ||| ||||||||||| |||||||| |||||| |||||| | Sbjct 2407 CGTCGCCTTGGTGGGCCGTTACCTCACCAACTAGCTAATCGGACGCGAGGCCATCTCAAA 2466 Query 181 GC-GATAAAT-CTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238 || ||| | |||| | | || |||| | || | | ||||||||||||||| | Sbjct 2467 GCGGATTGCTCCTTTTCCCTCTGTATCATGCGGTACTGTAATCTTATGCGGTATTAGCAT 2526 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 ||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct 2527 CTGTTTCCAAATGTTATCCCCCTCTGAAAGGCAGGTTGCTCACGCGTTACTCACCCGTCC 2586 Query 299 GCCACTAAG 307 ||||||||| Sbjct 2587 GCCACTAAG 2595 >seq2805 Length=2094 Score = 302 bits (334), Expect = 9e-80 Identities = 228/266 (86%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 40 CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAA 99 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 336 CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGTTCAA 277 Query 100 CCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 ||||||||||||||||| |||||||| |||||||||| ||| | | ||||||| ||||| Sbjct 276 CCTCTCAGTCCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCCCGCCAACTAGCTAAT 217 Query 160 CGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCC-TCTG 218 | | |||||| ||||||| |||||||||||||||| || || |||| | || | || Sbjct 216 CAGACGCGAGGCCATCTTGAAGCGATAAATCTTTGGCATAAAGATCATGCGACCCCTATG 157 Query 219 ACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCT 278 | | ||||||||||||| |||||||||| ||| | || |||| |||||||||| || Sbjct 156 -CGTCATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCTCTTCAAGGCAGGTTCCT 98 Query 279 CACGTGTTACTCACCCGTCCGCCACT 304 |||| ||||||||||||||||||||| Sbjct 97 CACGCGTTACTCACCCGTCCGCCACT 72 Score = 188 bits (208), Expect = 1e-45 Identities = 116/124 (94%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 461 GGCGTTGCTGGGTCAGGGTTTCCCCCATTGCCCAATATTCCCCACTGCTGCCTCCCGTAG 402 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 401 GAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGAT 342 Query 121 CGTC 124 |||| Sbjct 341 CGTC 338 >seq2793 Length=2112 Score = 217 bits (240), Expect = 3e-54 Identities = 234/306 (76%), Gaps = 19/306 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||||||||| |||||| |||||||||||||| ||| ||||||||||||||||| Sbjct 1439 GGCATGGCTGCATCAGAGTTTCCTCCATTGTGCAATATTCCCTACTGCTGCCTCCCGTAG 1498 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||||||||||||||||||||||||| | ||| |||||||| || |||| ||| Sbjct 1499 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTAGAGAT 1558 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCG--CGAGCCCATCTTT 178 ||||| || |||| || ||| |||||| |||| |||||| ||| | || ||||| Sbjct 1559 CGTCGCCTAGGTGAGCCTTTACCTCACCTACTAGCTAATC--CCGTTTGGGCACATCTGA 1616 Query 179 CAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238 |||| |||| | || | || ||| | | |||||||||||||| Sbjct 1617 TAGCG---AATCGCT--TC---------TTTCACCCTGAGGCTGTATGCGGTATTAGCAG 1662 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 |||||||||| ||| | || |||| ||| | ||| | || | |||||||||||||| Sbjct 1663 TCGTTTCCAACTGTTGTCCCCCTCTATCAGGTA-GTTTCCCAAATCTTACTCACCCGTCC 1721 Query 299 GCCACT 304 |||||| Sbjct 1722 GCCACT 1727 >seq2280 Length=3366 Score = 205 bits (226), Expect = 2e-50 Identities = 234/311 (75%), Gaps = 9/311 (3%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||| |||||||| ||||||||| || || ||| ||||||||||||||||| Sbjct 331 GGCGTTGCTCGGTCAGGGTTGCCCCCATTGCCGAAGATTCCCTACTGCTGCCTCCCGTAG 390 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||||||| |||||||| |||||| || Sbjct 391 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGTTCACCCTCTCAGGTCGGCTATGTAT 450 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| ||| | ||||||||| ||||| ||| | |||||| | Sbjct 451 CGTCGCCTTGGTAGGCCCTTACCCCACCAACTAGCTAATACAACGCAGGTCCATCTACTA 510 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTG------AC-ATTATGCGGTATT 233 | ||| || || || || || | | | | || || |||||||||||| Sbjct 511 GTGATGCAT-TTGCATCTTTCAAGTAT-CTAACATGTGTTAAATACTGTTATGCGGTATT 568 Query 234 AGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACC 293 ||| |||||||||| ||||| || | || ||||||||| | ||| |||||||||| Sbjct 569 AGCTATCGTTTCCAATAGTTATCCCCCGCTAGTAGGCAGGTTACCTACGCGTTACTCACC 628 Query 294 CGTCCGCCACT 304 ||| ||| ||| Sbjct 629 CGTTCGCAACT 639 >seq1599 Length=6876 Score = 205 bits (226), Expect = 2e-50 Identities = 234/311 (75%), Gaps = 9/311 (3%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||| |||||||| ||||||||| || || ||| ||||||||||||||||| Sbjct 1884 GGCGTTGCTCGGTCAGGGTTGCCCCCATTGCCGAAGATTCCCTACTGCTGCCTCCCGTAG 1825 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||||||| |||||||| |||||| || Sbjct 1824 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGTTCACCCTCTCAGGTCGGCTATGTAT 1765 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| ||| | ||||||||| ||||| ||| | |||||| | Sbjct 1764 CGTCGCCTTGGTAGGCCCTTACCCCACCAACTAGCTAATACAACGCAGGTCCATCTACTA 1705 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTG------AC-ATTATGCGGTATT 233 | ||| || || || || || | | | | || || |||||||||||| Sbjct 1704 GTGATGCAT-TTGCATCTTTCAAGTAT-CTAACATGTGTTAAATACTGTTATGCGGTATT 1647 Query 234 AGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACC 293 ||| |||||||||| ||||| || | || ||||||||| | ||| |||||||||| Sbjct 1646 AGCTATCGTTTCCAATAGTTATCCCCCGCTAGTAGGCAGGTTACCTACGCGTTACTCACC 1587 Query 294 CGTCCGCCACT 304 ||| ||| ||| Sbjct 1586 CGTTCGCAACT 1576 >seq1883 Length=4789 Score = 185 bits (204), Expect = 2e-44 Identities = 218/295 (74%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||||| | || ||||||| |||||| || |||||||||||||||||||||| | Sbjct 757 GCTGGTTCAGGCTCTCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 698 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||||||||| | | |||||||| | |||| |||||||| Sbjct 697 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTACTGATCGTCGC 638 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 |||||||||| ||| | | ||||| | |||||| | ||| |||||| ||| ||||| Sbjct 637 CTTGGTGGGCCGTTACCCCGCCAACAAGCTAATCAGACGCATCCCCATCCATCACCGATA 578 Query 187 AATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCC 246 ||||||| || |||| | || || || || |||||||| || |||| Sbjct 577 AATCTTTAATCTCTTTCAGATGTCTTCTAGAGATATCATTGGGTATTAGTCTTACTTTCG 518 Query 247 AAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCC 301 || ||||| || ||| ||||||||| ||| ||||||||||||| |||| Sbjct 517 CAAGGTTATCCCCAAGTGATGGGCAGGTTGGATACGCGTTACTCACCCGTGCGCC 463 >seq927 Length=17258 Score = 102 bits (112), Expect = 2e-19 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 57 GTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116 |||||||||||| |||||||||||| ||| |||||| | ||| |||||||| || |||| Sbjct 17258 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAG 17199 Query 117 CGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 |||||||| || |||| || ||| | |||| |||| |||||| Sbjct 17198 GGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATC 17155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998358506496