Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001436.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq1158 87.8 2e-15 >seq1158 Length=12287 Score = 87.8 bits (96), Expect = 2e-15 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 80 CTCGTTGAGCCACAGGCTGAAGGCGTCCTTGACCACGCCAGAGACAAACGCCGCTGCCTC 139 || ||| ||||||||| | ||||| || || ||||||||||| || || ||||| || | Sbjct 2164 CTGGTTCAGCCACAGGATAAAGGCATCTTTCACCACGCCAGAAACGAATGCCGC-GCATT 2222 Query 140 G-CGGGACGACAGGCGCTCCTTGGTCTGCCCGGAGAATTGCGGTTCCTGCATCTT 193 | || || || || ||||| || |||||||||| || ||||| |||||||| || Sbjct 2223 GACGCGAAGAGAGACGCTCTTTCGTCTGCCCGGCAAACTGCGGATCCTGCATTTT 2277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534378484388