Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq2793 147 2e-33 seq1870 140 3e-31 seq2805 127 2e-27 seq2319 122 7e-26 seq1599 118 9e-25 seq2084 114 1e-23 seq1883 75.2 9e-12 >seq2793 Length=2112 Score = 147 bits (162), Expect = 2e-33 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||||| ||| | || |||| |||| | |||| ||||||| Sbjct 540 TCGAGTTGCAGACTCCAATCCGAACTTAGGGACGCTTTTTGGGTTCCACTCCACCTCGCG 599 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | | ||||||||| | |||||||| ||||||| |||||| || ||||||||| Sbjct 600 GTATCGTTTCCCTCTGTACGCCCCATTGTAGCACGTGTGTAGCCCTGACCGTAAGGGCCA 659 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| |||||||||||||||| ||||||||| ||||||||| Sbjct 660 TGATGACTTGACGTCATCCCTGCCTTCCTCCAGTTTGTCAC 700 >seq1870 Length=4832 Score = 140 bits (154), Expect = 3e-31 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| || | |||| | |||||||| ||||||| Sbjct 4406 CGAGTTGCAGCCTACAATCCGAACTGAGAGAAGCTTTAAGAGATTAGCTTAGCCTCGCGA 4465 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || ||| | | |||| | |||||||| ||||||| ||||| |||||||| ||| Sbjct 4466 CTTCGCGACTCGTTGTACTTCCCATTGTAGCACGTGTGTAGCCCAGGTCATAAGGGGCAT 4525 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || || |||||||||||||||||||||||||||||||||| Sbjct 4526 GATGATTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 4565 >seq2805 Length=2094 Score = 127 bits (140), Expect = 2e-27 Identities = 127/161 (79%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| || |||| ||| || |||| |||||||| Sbjct 1358 CGAGTTGCAGCCTACAATCCGAACTGGGACGG-CTTTTGGGGGTTTGCTCTGCCTCGCGG 1300 Query 62 GTTGGCGGCCCTCTGTATGTAC--CATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 || || |||||||| || | |||||||| ||||||| ||||| |||||||| | Sbjct 1299 CTTTGCTTCCCTCTGT-TGACCGCCATTGTATTACGTGTGTAGCCCAGGACATAAGGGGC 1241 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 |||| || |||||||| |||||||||||||||| ||||||| Sbjct 1240 ATGATGATTTGACGTCGTCCCCACCTTCCTCCGTTTTGTCA 1200 >seq2319 Length=3243 Score = 122 bits (134), Expect = 7e-26 Identities = 125/160 (78%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 || ||||||| || | ||||| ||| ||| || ||| ||| || |||| |||||||| Sbjct 1398 CGGGTTGCAGCCTGCGATCCGAACTGAGAT-CATTTTTGGGGTTTTGCTCTGCCTCGCGG 1456 Query 62 GTTGGCGGCCCTCTGT--ATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 || || |||||||| ||| |||||||||| ||||||| ||||| |||||||| | Sbjct 1457 CTTTGCTTCCCTCTGTTAATG-ACCATTGTATTACGTGTGTAGCCCAGGTCATAAGGGGC 1515 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 |||| || |||||||| ||||||||||||||| ||||| Sbjct 1516 ATGATGATTTGACGTCGTCCCCACCTTCCTCCACCTTGTC 1555 >seq1599 Length=6876 Score = 118 bits (130), Expect = 9e-25 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| ||| |||| | |||| ||| || || | | Sbjct 2806 CGAGTTGCAGCCTACAATCCGAACTGAGATTGGCTTTAAGAGATTTGCTTGCCGTCACCG 2747 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | ||| | | |||| ||||||||| ||||||| ||||| |||||||| ||| Sbjct 2746 ACTTGCGACTCGTTGTACCAACCATTGTAGCACGTGTGTAGCCCAGGTCATAAGGGGCAT 2687 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || || ||||||||||||||||||||||||||||| Sbjct 2686 GATGATTTGACGTCATCCCCACCTTCCTCCGGTTT 2652 >seq2084 Length=3937 Score = 114 bits (126), Expect = 1e-23 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || || |||| ||| || |||||| | || ||||| |||||||| Sbjct 3025 CGAGTTGCAGCCTGCAGTCCGAACTGGGACGTTGTTTCTGAGTTTTGCTCCACCTCGCGG 3084 Query 62 GTTGGCGGCCCTCTGTATGTA-CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || | || ||| | |||||||| ||||||| ||||| | ||||| || || Sbjct 3085 TCTTGCTTCTCTTTGTTTAACGCCATTGTAGTACGTGTGTAGCCCAAGTCATAAAGGGCA 3144 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 ||| || ||||||||||||||||||||||||| ||||||| Sbjct 3145 TGATGATTTGACGTCATCCCCACCTTCCTCCGTTTTGTCA 3184 >seq1883 Length=4789 Score = 75.2 bits (82), Expect = 9e-12 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 72 CTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGA 131 ||||||| | |||||||| ||||||| ||||| | |||||||| || || |||| Sbjct 1607 CTCTGTACCTGCCATTGTAACACGTGTGTAGCCCCGGACGTAAGGGCCGTGCTGATTTGA 1548 Query 132 CGTCATCCCCACCTTCCTC 150 ||||||||||||||||||| Sbjct 1547 CGTCATCCCCACCTTCCTC 1529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415983251320