Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq2805 392 5e-107 seq2084 313 4e-83 seq2319 307 2e-81 seq1599 259 8e-67 seq2280 239 7e-61 seq2793 203 5e-50 seq1883 172 9e-41 >seq2805 Length=2094 Score = 392 bits (434), Expect = 5e-107 Identities = 261/290 (90%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 813 CCCACGCTTTCGCGCCTCACCGTCAGTTGTCGTCCAGCAATCCGCCTTCGCCACTGGTGT 754 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 753 TCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGATTGCCTCTCCGATAC 694 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||||| | |||||||||||||| | | ||||||||| | | |||||||||||||| Sbjct 693 TCAAGAAGAGTAGTTTCAAATGCAGTTCACGAGTTGAGCCCGTGGATTTCACATCTGACT 634 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 |||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 633 TGCCCTCCCGGCTACACGCCCTTTACACCCAGTAAATCCGGACAACGCTTGCCACCTACG 574 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 573 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTTTTCTCCAGGTA 524 >seq2084 Length=3937 Score = 313 bits (346), Expect = 4e-83 Identities = 233/273 (85%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||| |||||| ||||||||||||||| || |||| | ||||||||||||||||||| Sbjct 3566 CCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTAGGCCGCCTTCGCCACTGGTGT 3625 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||| ||||||||||| ||||||||| | ||||| || || Sbjct 3626 TCCTCCCGATATCTACGCATTCCACCGCTACACCGGGAATTCCGCCTACCTCTGCACTAC 3685 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||||||||||||| || |||| ||||||||||||||| | |||||| || ||| Sbjct 3686 TCAAGAAAAACAGTTTTGAAAGCAGTTCATGGGTTGAGCCCATGGATTTCACTTCCAACT 3745 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || |||||||||| | | ||||||||||||| ||| |||||| |||||||| ||||||| Sbjct 3746 TGTCTTCCCGCCTGCGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGTGACCTACG 3805 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGT 273 | ||||||||||||||||||||||||||||||| Sbjct 3806 TTTTACCGCGGCTGCTGGCACGTAGTTAGCCGT 3838 >seq2319 Length=3243 Score = 307 bits (340), Expect = 2e-81 Identities = 232/273 (85%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||| |||||| ||||||||||||||| || |||| | ||||||||||||||||||| Sbjct 1938 CCCACACTTTCGAGCCTCAGCGTCAGTTGGTGCCCAGTAGGCCGCCTTCGCCACTGGTGT 1997 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||| ||||||||||| ||||||||| | ||||| || || Sbjct 1998 TCCTCCCGATATCTACGCATTCCACCGCTACACCGGGAATTCCGCCTACCTCTGCACTAC 2057 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||||||||||||| || |||| ||||||||||||||| | |||||| || ||| Sbjct 2058 TCAAGAAAAACAGTTTTGAAAGCAGTTCATGGGTTGAGCCCATGGATTTCACTTCCAACT 2117 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || | |||||||| | | ||||||||||||| ||| |||||| |||||||| ||||||| Sbjct 2118 TGTCCTCCCGCCTGCGCTCCCTTTACACCCAGTAATTCCGGACAACGCTTGTGACCTACG 2177 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGT 273 | ||||||||||||||||||||||||||||||| Sbjct 2178 TTTTACCGCGGCTGCTGGCACGTAGTTAGCCGT 2210 >seq1599 Length=6876 Score = 259 bits (286), Expect = 8e-67 Identities = 222/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||||||||||||||||| | |||| | |||| |||||||| ||||| Sbjct 2258 CCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAGAGCCGCTTTCGCCACCGGTGT 2199 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||||||||| |||||||| | || || | |||| Sbjct 2198 TCCTCCATATATCTACGCATTTCACCGCTACACATGGAATTCCACTCTCCCCTTCTGCAC 2139 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| ||||||||| || || | || |||| |||| | ||| || || |||| Sbjct 2138 TCAAGTTTAACAGTTTCCAAAGCGAACAAT-GGTTAAGCCACTGCCTTTAACTTCAGACT 2080 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | |||||| | | | |||||| ||||||||||||||| |||||| | ||||||| Sbjct 2079 TATTAAACCGCCTGCGCTCGCTTTACGCCCAATAAATCCGGACAACGCTCGGGACCTACG 2020 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGT 273 ||||||||||||||||||||||||||||||||| Sbjct 2019 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGT 1987 >seq2280 Length=3366 Score = 239 bits (264), Expect = 7e-61 Identities = 195/234 (83%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 46 CTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGA 105 ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 1 CTTCGCCACTGGTGTTCCTCCATATATCTACGCATTTCACCGCTACACATGGAATTCCAC 60 Query 106 TTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATG-GGTTGAGCCCATA 164 | ||||| | ||||||||| ||||||| |||| | || ||||||||| Sbjct 61 TCTCCTCTTCTGCACTCAAGTTTCCCAGTTTCCAATG-ACCCTCCCCGGTTGAGCCGGGG 119 Query 165 GTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATA 224 | ||||||||| ||||| |||||| | | | |||||| ||||||||||||||| | Sbjct 120 GCTTTCACATCAGACTTAAGAAACCGCCTGCGCTCGCTTTACGCCCAATAAATCCGGACA 179 Query 225 ACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 ACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 233 >seq2793 Length=2112 Score = 203 bits (224), Expect = 5e-50 Identities = 214/282 (76%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| | ||||||||| || |||| | | ||||||||| |||||| Sbjct 1087 CCCACGCTTTCGCATATGAGCGTCAGTATTTGCCCAGGAGACTGCCTTCGCCTTTGGTGT 1146 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || ||| ||||||||||||| ||||||||||| ||||||||| | || || || || Sbjct 1147 TCTTCCAGATATCTACGCATTCCACCGCTACACCTGGAATTCCGTCTCCCCCTGCAATAC 1206 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | |||||| |||| | |||||||||| | ||||||||| ||| Sbjct 1207 TCTAGTCCACCAGTTTAGTATGCTGTTCCCAGGTTGAGCCCGGGGATTTCACATCCTACT 1266 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || |||||| || ||||||||| |||| | | |||| |||||||||| ||| || Sbjct 1267 TGATGAACCGCCTGCATGCCCTTTACGCCCAGTTATTCCGATTAACGCTTGCACCCTCCG 1326 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| |||| ||| Sbjct 1327 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTC 1368 >seq1883 Length=4789 Score = 172 bits (190), Expect = 9e-41 Identities = 212/290 (73%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||| | |||||| || |||||||||||| | ||||| | | |||||||| | || || Sbjct 1132 CCCGCACTTTCGAGCTTCAGCGTCAGTTGCGCTCCAGTGAGCTGCCTTCGCAATCGGAGT 1073 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || || ||||||| ||||||||||||||||| |||||||| | | | || Sbjct 1072 TCTTCGTGATATCTAAGCATTTCACCGCTACACCACGAATTCCGCCCACTTTGTGCGTAC 1013 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| ||| ||||| ||||| | ||||||| || ||||||| | || Sbjct 1012 TCAAGGAAACCAGTTCGCGCTGCAGTGCAGATGTTGAGCATCTACATTTCACAACACGCT 953 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | ||| |||||| | ||||||| |||||||||||||||||||||| | | | || Sbjct 952 TAATCTCCGGCCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGACCTTCCG 893 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| | ||||||| ||||||| | ||||| Sbjct 892 TATTACCGCGGCTGCTGGCACGGAATTAGCCGGTCCTTATTCATAAGGTA 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828766631476