Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq1599 122 6e-26 seq1870 116 3e-24 seq1883 82.4 5e-14 seq2838 80.6 2e-13 >seq1599 Length=6876 Score = 122 bits (134), Expect = 6e-26 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||||||||||||||| | | |||||||||||||| | || Sbjct 5735 TAGCTTTTATCCGTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGCCCGA 5676 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| |||||| ||||||||| |||||| | ||| | || || |||| | Sbjct 5675 CTTTCGTCCCTGCTCGAGTTGTAGCTCTCGCAGTCAAGCTCCCTTATACCTTTACACTCT 5616 Query 121 CACTACGATTTCCGACC 137 | ||||||| ||| Sbjct 5615 GCGAATGATTTCCAACC 5599 >seq1870 Length=4832 Score = 116 bits (128), Expect = 3e-24 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||||||||||||||| | | |||||||||||||| | || Sbjct 1497 TAGCTTTTATCCGTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGCCCGA 1556 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| | |||| | ||||||| |||||| | ||| |||| || |||| | Sbjct 1557 CTTTCGTCCCTGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTGTGCCTTTACACTCT 1616 Query 121 CACTACGATTTCCGACC 137 | ||||||| ||| Sbjct 1617 GCGAATGATTTCCAACC 1633 >seq1883 Length=4789 Score = 82.4 bits (90), Expect = 5e-14 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||| || |||||| || | || ||||||||||||| || Sbjct 4663 TACCTTTTATCCTTTGAGCGACGGAGTTTCCATACACATCCGCCGGATCACTATGCCCCA 4604 Query 61 CTTTCGCATCTGCTCTAGTTGT-TGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||| |||||| ||| ||| ||| || |||||| | ||| |||||||||||| Sbjct 4603 GTTTCCTGCCTGCTCGGCATGTCTGC-CTCCCAGTCAAGCGCCCTTATGCCATTGCACT 4546 >seq2838 Length=2052 Score = 80.6 bits (88), Expect = 2e-13 Identities = 105/142 (74%), Gaps = 5/142 (4%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATA-GCCACCGGATCACTATGACCT 59 || |||||||||||||||||||||| ||||| ||| | |||||||||||||| || Sbjct 1269 TAGCTTTTATCCGTTGAGCGATGGCATTTCCACTCACATACCACCGGATCACTAACTCCA 1210 Query 60 GCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTA 119 |||||| |||||| | || | ||||||| | | || | || ||| || ||| Sbjct 1209 ACTTTCGTTACTGCTCGACCCGTCGGTCTCGCAGTTAGGCTCGTTTATGCGTTTACAC-- 1152 Query 120 TCACT--ACGATTTCCGACCGT 139 ||| | |||||||||| |||| Sbjct 1151 TCAATGCACGATTTCCGTCCGT 1130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351986285200