Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq1599 120 3e-25 seq1870 111 1e-22 seq2838 109 5e-22 seq2532 107 2e-21 seq1883 73.4 4e-11 >seq1599 Length=6876 Score = 120 bits (132), Expect = 3e-25 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| | ||||||||||||||||| | || |||||| |||| Sbjct 5723 GTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGCCCGACTTTCGTCCCTG 5664 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||||| || ||||||||||||||| ||||| || || |||| | | ||| || Sbjct 5663 CTCGAGTTGTAGCTCTCGCAGTCAAGCTCCCTTATACCTTTACACTCTGCGAATGATTTC 5604 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || ||||| | || ||||||||| Sbjct 5603 CAACCATTCTGAGGGAACCTTTGGGCGCCTCCGTTA 5568 >seq1870 Length=4832 Score = 111 bits (122), Expect = 1e-22 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| | ||||||||||||||||| | || |||||| |||| Sbjct 1509 GTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGCCCGACTTTCGTCCCTG 1568 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || |||||||||||||| ||| |||| || |||| | | ||| || Sbjct 1569 CTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTGTGCCTTTACACTCTGCGAATGATTTC 1628 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || ||||| | || ||||||||| Sbjct 1629 CAACCATTCTGAGGGAACCTTTGGGCGCCTCCGTTA 1664 >seq2838 Length=2052 Score = 109 bits (120), Expect = 5e-22 Identities = 119/157 (76%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGA-ACCACCGGATCACTATGACCTGCTTTCGCACCT 82 ||||||||||||| ||||| ||| | ||||||||||||||| || |||||| || Sbjct 1257 GTTGAGCGATGGCATTTCCACTCACATACCACCGGATCACTAACTCCAACTTTCGTTACT 1198 Query 83 GCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGT 142 |||||| ||||| ||||||||| | || | |||||| || |||| | |||||| | Sbjct 1197 GCTCGACCCGTCGGTCTCGCAGTTAGGCTCGTTTATGCGTTTACACTCAATGCACGATTT 1138 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| ||||| | | | ||||| | || ||||||||| Sbjct 1137 CCGTCCGTGCTGAACGAACCTTTGAGCGCCTCCGTTA 1101 >seq2532 Length=2654 Score = 107 bits (118), Expect = 2e-21 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGA-ACCACCGGATCACTATGACCTGCTTTCGCACCT 82 ||||||||| ||| ||||||||| | ||| ||||||||||| || |||||| || Sbjct 528 GTTGAGCGACGGCATTTCCATTCACATACCGCCGGATCACTAACTCCAACTTTCGTTACT 469 Query 83 GCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT-AACCTCACGATG 141 ||||| |||||| |||||||| | || ||||| ||| || |||| | |||| | Sbjct 468 GCTCGGCCCGTCAGCCTCGCAGTTAGGCTAGCTTTTGCGTTTACACTCAGAGGCACGGTT 409 Query 142 TCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||||||| | |||| ||||| | || ||||||||| Sbjct 408 TCCGACCGTGCTGAGCTAACCTTTGAGCGCCTCCGTTA 371 >seq1883 Length=4789 Score = 73.4 bits (80), Expect = 4e-11 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||| || |||||| || | || ||||||||||||| || |||| ||||| Sbjct 4650 TTGAGCGACGGAGTTTCCATACACATCCGCCGGATCACTATGCCCCAGTTTCCTGCCTGC 4591 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||| ||| ||| ||||||||| |||||||||||||||| Sbjct 4590 TCGGCATGTCTGCCTCCCAGTCAAGCGCCCTTATGCCATTGCACT 4546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473580932272