Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1870 360 3e-97 seq2838 347 2e-93 seq1599 345 7e-93 seq2532 325 6e-87 seq595 262 6e-68 seq2058 224 2e-56 seq1883 104 4e-20 >seq1870 Length=4832 Score = 360 bits (398), Expect = 3e-97 Identities = 244/274 (89%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| ||||||||||| || ||||| ||||| Sbjct 1162 GAGGTGGGCTTCACACTTAGATGCTTTCAGCGTTTATCCCTTCCCTACATAGCTACCCAG 1221 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||||||| |||||| ||| |||||||||||||||||||||| Sbjct 1222 CGATGCCTCTGGCGAGACAACTGGTACACCAGCGGTAAGTCCATCCCGGTCCTCTCGTAC 1281 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 ||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| | Sbjct 1282 TAAGGACAGATCCTCTCAAATTTCCAACGCCCGCGACGGATAGGGACCGAACTGTCTCAC 1341 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1342 GACGTTCTGAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 1401 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||||||| ||||||||||||||| Sbjct 1402 GACTACAGCCCCAGGATGCGACGAGCCGACATCG 1435 >seq2838 Length=2052 Score = 347 bits (384), Expect = 2e-93 Identities = 233/260 (90%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| | ||| || ||||| ||||||||||| ||||||| Sbjct 1590 GCTTAGATGCTTTCAGCGTTTATCTCGTCCGTACATAGCTACCCAGCTATGCCCTTGGCA 1531 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1530 GGACAACTGGTGCACCAGAGGTACGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCC 1471 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||||| || ||||||| | || |||||||||||||||||||| ||||||||||||||| Sbjct 1470 TTCAAATCTCTTACGCCCGCAACAGATAGGGACCGAACTGTCTCACGACGTTCTGAACCC 1411 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 |||||||||||| ||||||| ||||||||||| ||||||||||||| | ||||||||||| Sbjct 1410 AGCTCGCGTGCCGCTTTAATTGGCGAACAGCCAAACCCTTGGGACCGAATTCAGCCCCAG 1351 Query 256 GATGAGACGAGCCGACATCG 275 |||| ||||||||||||||| Sbjct 1350 GATGCGACGAGCCGACATCG 1331 >seq1599 Length=6876 Score = 345 bits (382), Expect = 7e-93 Identities = 241/274 (88%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| ||||||||||| || ||||| ||||| Sbjct 6070 GAGGGGGGCTTCACACTTAGATGCTTTCAGCGTTTATCCCTTCCCTACATAGCTACCCAG 6011 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||||| ||||||||| |||||| ||| ||||| | ||||||||||||| Sbjct 6010 CGATGCCTTTGGCAAGACAACTGGTACACCAGCGGTAAGTCCACTCTGGTCCTCTCGTAC 5951 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| |||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 5950 TAGGAGCAGTTCCTCTCAAATTTCCTACGCCCGCGACGGATAGGGACCGAACTGTCTCAC 5891 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 5890 GACGTTCTGAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 5831 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||||||| ||||||||||||||| Sbjct 5830 GACTACAGCCCCAGGATGCGACGAGCCGACATCG 5797 Score = 322 bits (356), Expect = 7e-86 Identities = 228/261 (87%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| ||||||||||| || ||||| ||||| Sbjct 261 GAGGGGGGCTTCACACTTAGATGCTTTCAGCGTTTATCCCTTCCCTACATAGCTACCCAG 202 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||||| ||||||||| |||||| ||| ||||| | ||||||||||||| Sbjct 201 CGATGCCTTTGGCAAGACAACTGGTACACCAGCGGTAAGTCCACTCTGGTCCTCTCGTAC 142 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| |||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 141 TAGGAGCAGTTCCTCTCAAATTTCCTACGCCCGCGACGGATAGGGACCGAACTGTCTCAC 82 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 81 GACGTTCTGAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 22 Query 242 TACTTCAGCCCCAGGATGAGA 262 ||| ||||||||||||| || Sbjct 21 GACTACAGCCCCAGGATGCGA 1 >seq2532 Length=2654 Score = 325 bits (360), Expect = 6e-87 Identities = 233/268 (87%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 |||||| |||||||||| |||||| |||||| |||| || ||||| ||||||| ||| Sbjct 869 GGCTTCACGCTTAGATGCTTTCAGCGTTTATCCGTTCCGCACATAGCTGCCCAGCTGTGC 810 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 |||| |||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 809 CACTGGCGTGACAACTGGTGCACCAGAGGTGCGTCCATCCCGGTCCTCTCGTACTAGGGA 750 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 ||||||| |||||| |||| |||||||||| |||||||||||||||||||| ||||||| Sbjct 749 CAGCTCCCATCAAATATCCTGCGCCCACGACAGATAGGGACCGAACTGTCTCACGACGTT 690 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 ||||||||||||||||| || ||||||| ||||||||||| ||||||||||||| | | | Sbjct 689 CTGAACCCAGCTCGCGTACCGCTTTAATTGGCGAACAGCCAAACCCTTGGGACCGAATAC 630 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| || |||||||||||| Sbjct 629 AGCCCCAGGATGCGATGAGCCGACATCG 602 >seq595 Length=34093 Score = 262 bits (290), Expect = 6e-68 Identities = 217/265 (82%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| |||||||||| |||||| |||||| ||||| | |||||| || || ||| | Sbjct 33768 TTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTACCGGGCAGTGCCAT 33827 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 ||||| ||||| | |||||| | | ||||| ||||||||||||||||| | ||| Sbjct 33828 TGGCATGACAACCCGAACACCAGTGATGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAG 33887 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | || |||| | ||| |||||||| | |||||||||||||||||||| ||||||||| Sbjct 33888 CCCCCCTCAGTTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTA 33947 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||| Sbjct 33948 AACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCTACTTCAGC 34007 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| || |||||||||||| Sbjct 34008 CCCAGGATGTGATGAGCCGACATCG 34032 >seq2058 Length=4046 Score = 224 bits (248), Expect = 2e-56 Identities = 163/189 (86%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| ||||||||||| || ||||| ||||| Sbjct 3858 GAGGTGGGCTTCACACTTAGATGCTTTCAGCGTTTATCCCTTCCCTACATAGCTACCCAG 3917 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||||||| |||||| ||| |||||||||||||||||||||| Sbjct 3918 CGATGCCTCTGGCGAGACAACTGGTACACCAGCGGTAAGTCCATCCCGGTCCTCTCGTAC 3977 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 ||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| | Sbjct 3978 TAAGGACAGATCCTCTCAAATTTCCAACGCCCGCGACGGATAGGGACCGAACTGTCTCAC 4037 Query 182 GACGTTCTG 190 ||||||||| Sbjct 4038 GACGTTCTG 4046 >seq1883 Length=4789 Score = 104 bits (114), Expect = 4e-20 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 211 TTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGA 270 |||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||| Sbjct 4789 TTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCCAGCCCCAGGATGTGACGAGCCGA 4730 Query 271 CATCG 275 ||||| Sbjct 4729 CATCG 4725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780768564016