Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq974 95.1 2e-17 >seq974 Length=15858 Score = 95.1 bits (104), Expect = 2e-17 Identities = 180/264 (68%), Gaps = 1/264 (0%) Strand=Plus/Minus Query 14 CGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGCA 73 |||| || || || | ||| ||||| |||||| | | | || ||| | ||||||||| Sbjct 14308 CGCTTGAGTTTGCTGCGTTTCCGACC-ATTCTGTTGTTTACCACGCTGTTGCGTCTGGCA 14250 Query 74 TTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGCC 133 | ||||| || || || || | | | | | || || |||| || || || Sbjct 14249 CTTAACGTGGCTTCAACCCGTATCATTTTAATGGAAGGGCATACCGGCGCGGCGGCGGCA 14190 Query 134 GGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATC 193 || |||||| || | || |||||| | | | | || || || | || |||||||| Sbjct 14189 GGGAAGGTGGTCGAAGCGTTCGGTCACTTCCTCGTTGGTGGCAATTTCGCTATCGGTATC 14130 Query 194 GTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGG 253 |||||||| | || || |||||||||||||| |||| | ||||| || |||||||| Sbjct 14129 GTGGTGTTTGTCATTCTCGTGATCATCAACTTTATGGTCATTACCAAAGGTGCCGGGCGT 14070 Query 254 ATTTCCGAGGTGAGCGCGCGGTTT 277 || | || ||| | ||||| ||| Sbjct 14069 ATCGCAGAAGTGGGTGCGCGCTTT 14046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 809567404492