Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1883 399 7e-109 seq1870 333 9e-89 seq1599 259 2e-66 seq2084 156 1e-35 >seq1883 Length=4789 Score = 399 bits (442), Expect = 7e-109 Identities = 436/568 (77%), Gaps = 12/568 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||| | |||||||||| |||||| |||| |||||| |||||||||||||||||| | | Sbjct 2883 CGAGCCTGAACAGGGCGCACAGTCAGTGGGGGTAGACGCGAAACCAAGTGATCTACACTT 2942 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||||||||| |||||||||| |||||||||| ||| | | |||||||| Sbjct 2943 GGCCAGGATGAAGTCCCGGTAACACGGGATGGAGGTCCGCACCAATAAGCGTTGAAAAGC 3002 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||||| | | ||||| ||||||||| || |||||||||| |||||| || ||| Sbjct 3003 TTCTGGATGAGCCGAGTGTAGGAGTGAAAGGCCAATCAAACTTGGAGATAGCTCGTACTC 3062 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGC-ACTGTTAT 238 |||||| |||||||| || || | ||||| | | |||||||| || | || Sbjct 3063 CCCGAAAGGCATTTAGGTGCCGCGTCGGATGGTCACCGTGAGAGGTAGAGCGACCGATAG 3122 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT- 297 | | || ||| | | | | || | | | | | |||||||||||| || | || | Sbjct 3123 GACAAGAGGG-CTTCACCGCCTATCGAGTCCTGACGAACTCCGAATGCTCA-CGGTCTGC 3180 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | ||| ||| |||| |||||||||||||||| ||||||||||||||||||| ||| Sbjct 3181 AGTCCGGCAGTAAGGGGGCGGGTGCTAAGGTCCGTCCCCGAGAGGAGAAGAATCCAGACC 3240 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 | |||||| |||| | | || ||||| ||||||||||||| | ||| |||| Sbjct 3241 GCCGTCTAAGGTCCCGGAGTTCTGCCTGAGTTAGTCTAACGAAGTCTGGTCCCTATGACA 3300 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 3301 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTCAAAGAGTGCGTAACAGCTCACTAGTC 3360 Query 478 GAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT--C 535 |||| ||||| |||||||||||||||||| | | | | ||||||| | ||||| | Sbjct 3361 GAGGGTCCGGGCATGGATAATAATCGGGTATAAGGCAGAC-ACCGAAGGCGCGGGATAGC 3419 Query 536 ATTTAT---ATGATCGGTAGGGGAGCAT 560 | |||| | |||||||||||||||| Sbjct 3420 AATTATAAAAGTATCGGTAGGGGAGCAT 3447 >seq1870 Length=4832 Score = 333 bits (368), Expect = 9e-89 Identities = 397/533 (74%), Gaps = 7/533 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||| ||| ||||||||||||||| |||||||||||| Sbjct 3275 CGAGTCTGAATAGGGCGAATGAGTAAGTGGTCGTAGACCCGAAACCATGTGATCTACCCA 3216 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || ||||| |||||||||||||| |||| ||||||| |||||||||| | |||||||| Sbjct 3215 TGTCCAGGTTGAAGGTGCGGTAAAACGCACTGGAGGACCGAACCCACGTACGTTGAAAAG 3156 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | ||||||||| ||||||||| || |||| | |||| |||||||| |||||||||||| Sbjct 3155 TGCGGGGATGAGGTGTGGGTAGCGGAGAAATTCCAAACGAACTTGGAGATAGCTGGTTCT 3096 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCA-AGTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||||||| |||||| |||||| |||| | || |||||||||||||| Sbjct 3095 CTCCGAAATAGCTTTAGGGCTAGCCTCAGAGTAAGAATGATGGAGGTAGAGCACTGTTTG 3036 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTA 298 | ||||||| ||| || ||||| || ||||||||||||| |||| || Sbjct 3035 GACTAGGGGCCCATCTCGGGTTACCGAATTCAGATAAACTCCGAATGC-CATCCATTCAT 2977 Query 299 CCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 | |||||| || || ||| |||| ||| | ||| ||| || | || ||| | Sbjct 2976 CTCTGGGAGTCAGACTGTGAGTGATAAGATCCATAGTCGAAAGGGAAACAGCCCAGACCA 2917 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG 418 ||||||||| ||| |||| || ||||| || || || || | |||| ||||| Sbjct 2916 CCAGCTAAGGTCCCCAAATAACTATTAAGTGGAA--AAGGATGTGGGGTTGCACAGACAA 2859 Query 419 CTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCG 478 ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| Sbjct 2858 CTAGGATGTTGGCTTAGAAGCAGCCA-CCATTTAAAGAGTGCGTAATAGCTCACTAGTCG 2800 Query 479 AGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGG 531 || | ||| || ||| | || ||| | || ||||||||| |||| Sbjct 2799 AGTGACCCTGCGCCGAAAATGTACCGGGGCTAAATAGTTTACCGAAGCTGTGG 2747 >seq1599 Length=6876 Score = 259 bits (286), Expect = 2e-66 Identities = 357/489 (73%), Gaps = 19/489 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || |||||| | ||| | | ||||||||||||||| |||| ||||||| Sbjct 3963 CGAGTCTTAATAGGGCGGCTTAGTATCATGTCGTAGACCCGAAACCATGTGACCTACCCA 4022 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| |||||||| ||||| || | ||||||| ||| ||| | |||||||| Sbjct 4023 TGAGCAGGGTGAAGGTGAGGTAAAACTCACTGGAGGCCCGCACCAGGGCACGTTGAAAAG 4082 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| ||||||||| || |||| | |||| |||||||| |||||||||||| Sbjct 4083 TGCTTGGATGACTTGTGGGTAGCGGAGAAATTCCAAACGAACTTGGAGATAGCTGGTTCT 4142 Query 180 CTCCGAAAACTATTTAGG--TAGTGCC----TCAAGTATCACCATCGGGGGTAGAGCACT 233 |||||||| |||||| ||| | | | |||| || | || ||||||||||| Sbjct 4143 CTCCGAAATAGCTTTAGGGCTAGCGTCGATGTTAAGTCTC----TTGGAGGTAGAGCACT 4198 Query 234 GTTATGGCT-AGGGGGTCATTGCGACTTACCAA-ACCATTGCAAACTCCGAATGCGCATC 291 ||| || | ||||| ||| || ||||||| | || ||||||||||||| || Sbjct 4199 GTT-TGATTGAGGGGTCCATCCCGGATTACCAATATCA-GATAAACTCCGAATGCCAATG 4256 Query 292 AGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATC 351 || | || ||| ||| || | |||||||| ||||| ||| ||| || | | Sbjct 4257 AGATATA-ATCGGCAGTCAGACTGCGAGTGCTAAGATCCGTAGTCGAAAGGGAAACAGCC 4315 Query 352 CGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCT 411 | ||| | ||||||||| ||| |||| | ||||| || || || || | |||| Sbjct 4316 CAGACCACCAGCTAAGGTCCCAAAATATATGTTAAGTGGAA--AAGGATGTGGGGTTGCA 4373 Query 412 AAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 ||||| |||||||||| |||| |||||||| ||||||| ||||||||||||| |||||| Sbjct 4374 CAGACAACTAGGATGTTAGCTTAGAAGCAGCTATTCATTCAAAGAGTGCGTAATAGCTCA 4433 Query 472 CTAGTCGAG 480 ||||||||| Sbjct 4434 CTAGTCGAG 4442 >seq2084 Length=3937 Score = 156 bits (172), Expect = 1e-35 Identities = 314/451 (70%), Gaps = 20/451 (4%) Strand=Plus/Minus Query 37 CCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGT 96 ||||||||| |||| |||||||||| |||| ||||| | |||| | || |||||| Sbjct 1608 CCCGAAACCGGGTGACCTACCCATGGTCAGGTTGAAGTGGAAGTAAAATTCCATGGAGGA 1549 Query 97 CCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAA 156 ||||||| || |||||||| | |||||| |||||||||| || |||| | || Sbjct 1548 CCGAACCGACCTCCGTTGAAAAGGCGGCGGATGAACTGTGGGTAGCGGAGAAATTCCAAT 1489 Query 157 CAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGT---ATC 213 | ||| ||| ||||||||||||| |||||| |||||| ||||||||| || Sbjct 1488 CGAACCCGGAGATAGCTGGTTCTCCCCGAAATAGTTTTAGGACTAGCCTCAAGTTAGAT- 1430 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 ||| || |||| ||||||| | |||| || | | ||| | || | | | Sbjct 1429 ACC--TGGAGGTAAAGCACTGAATAGCCTAGCGGCCGAGAG---GTTAGCGAAGCTTATC 1375 Query 274 AAACTCCGAATGCGCATCAGTTTTACCGC--GGGAGTGAGGGCATGGGTGCT-AAGGTCC 330 |||||| |||||| || ||| || || |||||| || || | | || ||| Sbjct 1374 AAACTCAGAATGC-CA-GAGTATTGATGCTTGGGAGTCAGACAGTGTCAGATAAATGTCA 1317 Query 331 GTGCCCGAGAGGAGAAGAATCCGGA-CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTT 389 || | | ||| || | || || ||| ||||||||| ||| || | | | ||||| Sbjct 1316 TTG-TCAAAAGGGAAACAGCCCAGATCTA-CAGCTAAGGTCCCAAAGTCA-GGTTAAGTG 1260 Query 390 AAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCAT 449 || ||||| || | | ||||| | |||||||||||| |||||||||| |||| Sbjct 1259 GAA--AACGATGTGAAGATACGCAGACAACCAGGATGTTGGCTCAGAAGCAGCCACTCAT 1202 Query 450 TTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 | ||||||||||||| |||||||| |||||| Sbjct 1201 TCAAAGAGTGCGTAATAGCTCACTGGTCGAG 1171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689529780224