Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1883 138 2e-30 seq1870 132 9e-29 seq1599 131 3e-28 seq2319 118 2e-24 seq2084 118 2e-24 >seq1883 Length=4789 Score = 138 bits (152), Expect = 2e-30 Identities = 185/249 (74%), Gaps = 14/249 (6%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTAC--AGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 |||| |||||||| ||| | || |||||||||||||||| || ||||||||||| Sbjct 2252 ATGGCGGATGCCTAGGC--TCACGGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCTT 2309 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 |||| || | ||||| | |||||||||| ||||||||||||||| |||| ||| | | Sbjct 2310 CGGGTAG-GTGCAAATAACCTTTGATCCGAAGATTTCCGAATGGGACAACCTAGCCGTCT 2368 Query 126 G--GGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATC 183 | || | | | || | || || || | | ||| ||||| | ||||||||||||| Sbjct 2369 GAAGGAC---GGTTACT-AGCACTTATGTGT-TAGAGCTAACGCAGGGAACTGAAACATC 2423 Query 184 TAAGTAGCTGCAGGAAAAGAAATCAACCGA--GATTCCCAAAGTAGTGGCGAGCGAAATG 241 | |||| ||| ||||| ||||| || | ||||||| |||||||||||||||| | Sbjct 2424 TTAGTACCTGTAGGAAGAGAAAATAAATTAATGATTCCCCCAGTAGTGGCGAGCGAACGG 2483 Query 242 GGATGAGCC 250 ||| |||| Sbjct 2484 GGAACAGCC 2492 >seq1870 Length=4832 Score = 132 bits (146), Expect = 9e-29 Identities = 191/261 (73%), Gaps = 15/261 (6%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGAT 59 || || || ||||||||||||||| | || |||||||||||| | || | |||| Sbjct 3934 AGGGCGCACGGTGGATGCCTTGGCACTAGGAGCCGATGAAGGACGGGACTAACAC-CGAT 3876 Query 60 AAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 | ||| ||||||| | || | |||||||||| |||||||||||||||||||||| Sbjct 3875 ATGCTTCGGGGAGCT-GTAAGTAAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCCAA 3817 Query 120 CC-CTTT----GGGT----CATTGCATGCTGAATACATAGGTATGCAAAGCGA-ACGCGG 169 | |||| || | | || || ||||||||||| | | || | |||| | Sbjct 3816 CATCTTTTATAGGATGTTACTTTTCAG--TGAATACATAGCTGATTAGAGGTAGACGCAG 3759 Query 170 CGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTG 229 ||||||||||||||||||| ||||||||| ||||| || ||||||| ||||| | Sbjct 3758 AGAACTGAAACATCTAAGTACCTGCAGGAAGAGAAAGAAAAATCGATTCCCTGAGTAGCG 3699 Query 230 GCGAGCGAAATGGGATGAGCC 250 |||||||||| |||| |||| Sbjct 3698 GCGAGCGAAACGGGAAAAGCC 3678 >seq1599 Length=6876 Score = 131 bits (144), Expect = 3e-28 Identities = 187/254 (74%), Gaps = 11/254 (4%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGAT 59 || || || ||||||||||||||| | || ||||||||||||| | || | ||| Sbjct 3311 AGGGCGCACGGTGGATGCCTTGGCACTAGAAGCCGATGAAGGACGTGACTAACGA-CGAA 3369 Query 60 AAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 | ||| ||||||| | || | || |||||| |||| ||||||||||| ||||||| Sbjct 3370 ATGCTTTGGGGAGTT-GTAAGTAAACAGTGATCCAGAGATGTCCGAATGGGGGAACCCGG 3428 Query 120 CCCTTTGGGTCATTGCATGCTGAATACAT---AGGTA-TGCAAAGCGA-ACGCGGCGAAC 174 | | || ||| || || | ||| ||||| || | || | |||| | |||| Sbjct 3429 CA-TGTGATGCATGTCA--CTCATTACTGTTAAGGTAATGAAGAGGAAGACGCAGTGAAC 3485 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 ||||||||||||||||||||||||| ||||| ||| || |||| || ||||| |||||| Sbjct 3486 TGAAACATCTAAGTAGCTGCAGGAAGAGAAAGCAAACGCGATTGCCTTAGTAGCGGCGAG 3545 Query 235 CGAAATGGGATGAG 248 |||| ||| | ||| Sbjct 3546 CGAAGTGGCAAGAG 3559 >seq2319 Length=3243 Score = 118 bits (130), Expect = 2e-24 Identities = 181/248 (73%), Gaps = 14/248 (6%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || || || || | |||||||||| | || ||| ||||||||||| | ||||| Sbjct 663 AGAGCGCAAGGGGAATGCCTTGGCACTGGGAGCCGACGAAGGACGTAGCGATCTACGATA 604 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||| ||| ||| | || || | | || ||| ||||||||||||||| |||| ||| Sbjct 603 AGCCACGGTGAGCC-GAAAGCAGGCATCGACCCGTGGATTTCCGAATGGGGCAACCTGGC 545 Query 121 CCTTTGGG--TCATTG--CATGC--TGAATACA-TAG--GTATGCAAAGCGAACGCGGC- 170 | | ||| | ||| | |||||| | ||| ||||| | | |||| || | Sbjct 544 TGAATAAGAATCAGTCAACATACGGTGAATAAAATAGTCGTATGTA--GGGAAC-CGCCT 488 Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 487 GAACTGAAACATCTAAGTAGGGCGAGGAAAAGAAATCAACCGAGATTCCGCAAGTAGTGG 428 Query 231 CGAGCGAA 238 |||||||| Sbjct 427 CGAGCGAA 420 >seq2084 Length=3937 Score = 118 bits (130), Expect = 2e-24 Identities = 181/253 (72%), Gaps = 20/253 (8%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || || || || | |||||||||| | || ||||||| ||||| || ||||||| Sbjct 2304 AGGGCGCAGGGCGAATGCCTTGGCACTGGGAGCCGATGAAAGACGTGATAAGCTGCGATA 2245 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| | | |||||||| ||||||| ||||| |||||| | | Sbjct 2244 AGCTTCGGGGAGCT-GCAAATAAGCATTGATCCGGAGATTTCTGAATGAGGAAACTCACC 2186 Query 121 CCTTTGGGTCAT-------TGC---ATGCTGAAT----ACATAGGTATGCAAAGCGAACG 166 | || |||| | | || ||||| | ||||||| || |||| Sbjct 2185 ---TGGGTTCATACTCAGGTACGTTATACTGAAATTCAAAATAGGTACATCGAGGGAAC- 2130 Query 167 CGGC-GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGT 225 || | |||||||||||||||||||| ||||| ||| ||||| ||||||||| |||| Sbjct 2129 CGCCTGAACTGAAACATCTAAGTAGGGCGAGGAAGAGACATCAAACGAGATTCCGTAAGT 2070 Query 226 AGTGGCGAGCGAA 238 ||||||||||||| Sbjct 2069 AGTGGCGAGCGAA 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918361831296