Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2742 98.7 2e-18 seq2729 98.7 2e-18 seq2596 98.7 2e-18 seq2155 98.7 2e-18 seq1930 98.7 2e-18 seq1905 98.7 2e-18 seq1873 98.7 2e-18 seq1861 98.7 2e-18 seq1839 98.7 2e-18 seq1782 98.7 2e-18 seq852 80.6 4e-13 >seq2742 Length=2201 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || ||| | |||| Sbjct 1769 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTTGAAAGGCCAGT 1826 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 1827 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 1879 >seq2729 Length=2227 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || ||| | |||| Sbjct 608 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTTGAAAGGCCAGT 551 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 550 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 498 >seq2596 Length=2499 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || ||| | |||| Sbjct 1759 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTTGAAAGGCCAGT 1816 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 1817 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 1869 >seq2155 Length=3733 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || ||| | |||| Sbjct 624 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTTGAAAGGCCAGT 567 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 566 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 514 >seq1930 Length=4564 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || ||| | |||| Sbjct 3942 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTTGAAAGGCCAGT 3999 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 4000 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 4052 >seq1905 Length=4668 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || ||| | |||| Sbjct 4048 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTTGAAAGGCCAGT 4105 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 4106 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 4158 >seq1873 Length=4818 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || ||| | |||| Sbjct 3817 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTTGAAAGGCCAGT 3874 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 3875 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 3927 >seq1861 Length=4896 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || ||| | |||| Sbjct 4276 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTTGAAAGGCCAGT 4333 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 4334 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 4386 >seq1839 Length=5065 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || ||| | |||| Sbjct 3079 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTTGAAAGGCCAGT 3136 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 3137 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 3189 >seq1782 Length=5454 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || |||| | |||||| |||| || ||| | |||| Sbjct 4850 GTACGAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTTGAAAGGCCAGT 4907 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||||||||||| ||| ||| ||||||||||||||||||||||| Sbjct 4908 GGCGCGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCTAAGTCAGAATC 4960 >seq852 Length=19741 Score = 80.6 bits (88), Expect = 4e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | || |||| | |||||| |||| || || | |||| Sbjct 2655 GTACTAGAGGAACCGCAGGAT-CAGAC-ATTTGGTTCATGCGCTTGGTCGAAAGGCCAGT 2712 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | | ||||||||||||||| ||| ||| ||||||||||| ||||||||||| Sbjct 2713 GGCACGAAGCTACCATCTGAAAGATAATGACTGAACGCCTCGAAGTCAGAATC 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819167017984