Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq18 159 3e-34
seq63 122 7e-23
>seq18
Length=263653
Score = 159 bits (176), Expect = 3e-34
Identities = 254/362 (70%), Gaps = 2/362 (1%)
Strand=Plus/Plus
Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317
||||| || | | ||| | || ||| | ||||| || || || ||||||||||| |||
Sbjct 149978 GAACGCTTTTCTCGGGAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCAAATT 150037
Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG 61377
|| || |||||| | |||||||||||||| ||| | || || || ||||| || ||
Sbjct 150038 GCTATAGAGAATATTCACTCGGAGATGTATAGTCTGCTGATTGACACGTATATTCAAGAT 150097
Query 61378 CGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA 61437
|||||||| | | ||||||| ||||| ||||| || || || ||| |||
Sbjct 150098 GAAGCGGAACGCCACCACCTGTTCAACGCCATTGAGACCATTCCATGCGTTAAGAAGAAG 150157
Query 61438 GCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCT 61496
|| |||||||| || | | ||||| | | || | | |||| | || ||| | |
Sbjct 150158 GCCGATTGGGCTCTACGA-TGGATAGCGGACAAAAAGTCACCATTCAGAGATCGACTTGT 150216
Query 61497 GGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTT 61556
|||||||| | ||||||||| |||| || |||| ||||| | || || ||| |
Sbjct 150217 AGCATTTGCCGCCGTCGAGGGTATATTCTTTTCTGGAAGCTTTGCTTCGATTTTCTGGCT 150276
Query 61557 GAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616
||||||||||| || ||||| || || || || ||||||||| | || || || || ||
Sbjct 150277 AAAGAAACGTGGTCTCATGCCAGGGCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGA 150336
Query 61617 GG 61618
||
Sbjct 150337 GG 150338
Score = 100 bits (110), Expect = 2e-16
Identities = 168/241 (70%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT 61753
|||| | || |||||||| | || || || || || || || || || | || |||
Sbjct 150461 AGATCATACGAGAGGCGGTCGCCATTGAGCAAGAGTTCCTTACCGAGGCACTTCCTGTCA 150520
Query 61754 CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC 61813
|| |||||||||||||| | ||| |||| || || || |||| || ||||| |||
Sbjct 150521 ACCTGATCGGCATGAATTGCGTACTGATGTGCCAATACATAGAATACGTGGCCGATCGTT 150580
Query 61814 TGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGG 61873
||||||| || |||| | ||| || ||| | | || || || || || ||||
Sbjct 150581 TGTTGGTTGAGTTGGACTGCGACAAGATATACAATGCTGAGAATCCGTTCGACTTTATGG 150640
Query 61874 ACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG--AGAAACGTGTAGGCGACTATCA 61931
| ||||| ||||| || || ||||| ||||| || | ||||| ||| ||||| || ||
Sbjct 150641 AAATGATATCGCTTGAAGGTAAGACCAATTTCTTTGAAAGAAAGGTG--GGCGAATACCA 150698
Query 61932 A 61932
|
Sbjct 150699 A 150699
>seq63
Length=178715
Score = 122 bits (134), Expect = 7e-23
Identities = 308/475 (65%), Gaps = 54/475 (11%)
Strand=Plus/Minus
Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111
||| || || ||||| || |||||||| || ||||| ||||| || || || |||||
Sbjct 171615 ATATTCTACTATTTCAGTACACAGATTGGAACACCGTATAGTGCCTAAGTTTTGCTGATT 171556
Query 66112 ACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171
||| | |||||| ||||| || |||| |||| | |||||||| ||||| | || ||
Sbjct 171555 GGACTTTCTATTGCAAGCATCTTTATACACCATGAAAGGAGTGCCAGTCTCGATCTGCGA 171496
Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT----ACCGCCCTACCTT 66227
|||||| ||||||| |||||| ||||||||| ||||| | || ||| ||
Sbjct 171495 CTCAATTATGGCGTACCAAAGTTGCTGTGCCTTCAATTTACGTCTGTAACGGCCTTCCGC 171436
Query 66228 TGCGTT--------------------------CG-------------------TAA-TGT 66241
| ||| || ||| | |
Sbjct 171435 TTCGTATCTATAGAATATAAGCAATAGTAGCACGATTAAATATCAAGGGACAATAACTTT 171376
Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301
||||| | || ||||| |||||||| ||||| || | || | | |||||
Sbjct 171375 TCGTATAATTGGTCGAACTGATCACCCCAAACTTCATCAAGGCCGGGGCTTTCATGTGGG 171316
Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361
||||||| ||||||||||||| ||| | ||| ||||| |||| || ||||||||
Sbjct 171315 CACATCAAACACCAATCACCATCTGCTTCAATACGCCGCATGAATAAGTCTGGTATCCAA 171256
Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATG-CCGTGAT-TTTTGCGCAAGT 66419
|| |||||||| | ||| | || || | || || || ||||| | | | ||| ||
Sbjct 171255 AGCGCGTAGAACAAATCTCTAGCACGGTTTTCGTCTTTGCCCGTGTTCCTCTTCGC--GT 171198
Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474
||||| ||||| || || |||||||||||||||| ||| || || |||| |||
Sbjct 171197 GCAGGAAGTCAAAAATATCTGCATGCCATGGTTCCAAGTATATAGCAAACGCGCC 171143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397547862683840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |