Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18 159 3e-34 seq63 122 7e-23 >seq18 Length=263653 Score = 159 bits (176), Expect = 3e-34 Identities = 254/362 (70%), Gaps = 2/362 (1%) Strand=Plus/Plus Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 ||||| || | | ||| | || ||| | ||||| || || || ||||||||||| ||| Sbjct 149978 GAACGCTTTTCTCGGGAAATTCAGGTGACAGAGGCTCGCTGCTTTTACGGCTTCCAAATT 150037 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAG 61377 || || |||||| | |||||||||||||| ||| | || || || ||||| || || Sbjct 150038 GCTATAGAGAATATTCACTCGGAGATGTATAGTCTGCTGATTGACACGTATATTCAAGAT 150097 Query 61378 CGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA 61437 |||||||| | | ||||||| ||||| ||||| || || || ||| ||| Sbjct 150098 GAAGCGGAACGCCACCACCTGTTCAACGCCATTGAGACCATTCCATGCGTTAAGAAGAAG 150157 Query 61438 GCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCT 61496 || |||||||| || | | ||||| | | || | | |||| | || ||| | | Sbjct 150158 GCCGATTGGGCTCTACGA-TGGATAGCGGACAAAAAGTCACCATTCAGAGATCGACTTGT 150216 Query 61497 GGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTT 61556 |||||||| | ||||||||| |||| || |||| ||||| | || || ||| | Sbjct 150217 AGCATTTGCCGCCGTCGAGGGTATATTCTTTTCTGGAAGCTTTGCTTCGATTTTCTGGCT 150276 Query 61557 GAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 ||||||||||| || ||||| || || || || ||||||||| | || || || || || Sbjct 150277 AAAGAAACGTGGTCTCATGCCAGGGCTCACTTTTAGCAATGAGCTCATCTCCCGAGATGA 150336 Query 61617 GG 61618 || Sbjct 150337 GG 150338 Score = 100 bits (110), Expect = 2e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT 61753 |||| | || |||||||| | || || || || || || || || || | || ||| Sbjct 150461 AGATCATACGAGAGGCGGTCGCCATTGAGCAAGAGTTCCTTACCGAGGCACTTCCTGTCA 150520 Query 61754 CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC 61813 || |||||||||||||| | ||| |||| || || || |||| || ||||| ||| Sbjct 150521 ACCTGATCGGCATGAATTGCGTACTGATGTGCCAATACATAGAATACGTGGCCGATCGTT 150580 Query 61814 TGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGG 61873 ||||||| || |||| | ||| || ||| | | || || || || || |||| Sbjct 150581 TGTTGGTTGAGTTGGACTGCGACAAGATATACAATGCTGAGAATCCGTTCGACTTTATGG 150640 Query 61874 ACATGATTTCGCTGGATGGCAAGACGAATTTTTTCG--AGAAACGTGTAGGCGACTATCA 61931 | ||||| ||||| || || ||||| ||||| || | ||||| ||| ||||| || || Sbjct 150641 AAATGATATCGCTTGAAGGTAAGACCAATTTCTTTGAAAGAAAGGTG--GGCGAATACCA 150698 Query 61932 A 61932 | Sbjct 150699 A 150699 >seq63 Length=178715 Score = 122 bits (134), Expect = 7e-23 Identities = 308/475 (65%), Gaps = 54/475 (11%) Strand=Plus/Minus Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||| || || ||||| || |||||||| || ||||| ||||| || || || ||||| Sbjct 171615 ATATTCTACTATTTCAGTACACAGATTGGAACACCGTATAGTGCCTAAGTTTTGCTGATT 171556 Query 66112 ACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 ||| | |||||| ||||| || |||| |||| | |||||||| ||||| | || || Sbjct 171555 GGACTTTCTATTGCAAGCATCTTTATACACCATGAAAGGAGTGCCAGTCTCGATCTGCGA 171496 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGT----ACCGCCCTACCTT 66227 |||||| ||||||| |||||| ||||||||| ||||| | || ||| || Sbjct 171495 CTCAATTATGGCGTACCAAAGTTGCTGTGCCTTCAATTTACGTCTGTAACGGCCTTCCGC 171436 Query 66228 TGCGTT--------------------------CG-------------------TAA-TGT 66241 | ||| || ||| | | Sbjct 171435 TTCGTATCTATAGAATATAAGCAATAGTAGCACGATTAAATATCAAGGGACAATAACTTT 171376 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301 ||||| | || ||||| |||||||| ||||| || | || | | ||||| Sbjct 171375 TCGTATAATTGGTCGAACTGATCACCCCAAACTTCATCAAGGCCGGGGCTTTCATGTGGG 171316 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 ||||||| ||||||||||||| ||| | ||| ||||| |||| || |||||||| Sbjct 171315 CACATCAAACACCAATCACCATCTGCTTCAATACGCCGCATGAATAAGTCTGGTATCCAA 171256 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATG-CCGTGAT-TTTTGCGCAAGT 66419 || |||||||| | ||| | || || | || || || ||||| | | | ||| || Sbjct 171255 AGCGCGTAGAACAAATCTCTAGCACGGTTTTCGTCTTTGCCCGTGTTCCTCTTCGC--GT 171198 Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474 ||||| ||||| || || |||||||||||||||| ||| || || |||| ||| Sbjct 171197 GCAGGAAGTCAAAAATATCTGCATGCCATGGTTCCAAGTATATAGCAAACGCGCC 171143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397547862683840