Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_022791.1 Length=37375 Score E Sequences producing significant alignments: (Bits) Value seq729 145 2e-30 >seq729 Length=25020 Score = 145 bits (160), Expect = 2e-30 Identities = 223/313 (71%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 24134 TTCCAACAGTTGAAAATTACTGGCAACAACTTCTGTGACATAAACACGTTGACCTTGCTG 24193 |||||| | ||| ||||| |||||||||||||| ||||| |||||||| |||||||| Sbjct 1014 TTCCAATAATTGGAAATTCTCAGCAACAACTTCTGTCACATAGACACGTTGCCCTTGCTG 1073 Query 24194 GTTATCATAGCTACGTGTTTGAATTACTCCTGTAACTCCGATAAGAGAGCCTTTTTTAGC 24253 || ||||| | | |||||| || || || || || | ||||| ||||| || Sbjct 1074 ATTTTCATAATTTCTTGTTTGGATACGGCCAGTCACACCTAAAAGAGTTCCTTTGCGCGC 1133 Query 24254 CCAATTAGCAAGATTTTCAGCTAACTGTCTCCAGATAACGCAATTGATAAAATCAGCCTC 24313 ||||||| | | |||| ||| | | | ||| || || |||||||||||||| ||||| Sbjct 1134 ATAATTAGCTAAAGTTTCTGCTGATTTCCGCCAAATTACACAATTGATAAAATCCGCCTC 1193 Query 24314 ACGCTCTCCAGCCTCG-TTCTTAAATGGACGGTTTACAGCAAGAGTAAACGTAGCAACCG 24372 || | ||| || | | ||| |||| ||| || ||||| | ||||||||| ||||| Sbjct 1194 GCGAT-TCCCGCTTTGATTCGTAAAATTACGATTCACAGCTAAAGTAAACGTGGCAACAC 1252 Query 24373 CAATATTAGATTGC-GTGTATCTCAGTTCGGCATCTCTTGTAAGTCGCCCTACTAAAACA 24431 | || | |||| ||||| | | || | ||| |||| | || || |||| ||| Sbjct 1253 CTGTACCA-TTTGCGGTGTAGCGTAAATCAGGATCCTTTGTTAAACGACCAACTAGTACA 1311 Query 24432 ACGTTATTTATCA 24444 || ||||| |||| Sbjct 1312 ACATTATTAATCA 1324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119472503442264