Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1146 275 2e-69 seq1600 127 6e-25 seq729 105 2e-18 >seq1146 Length=12572 Score = 275 bits (304), Expect = 2e-69 Identities = 562/824 (68%), Gaps = 37/824 (4%) Strand=Plus/Minus Query 2100 TCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAA--TCGCTTTCCAA 2157 ||| |||||||||||||||||||||||| ||| | ||| ||| | | | |||| Sbjct 1111 TCCGATGATGAACATCATCAACGGTGGTGAGCACGCTGACAA--CAACGTTGATATCCAG 1054 Query 2158 GAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCT 2217 ||||| |||||| || | ||| || ||| | |||||||| | || |||| || Sbjct 1053 GAATTCATGATTCAGCCGGTTGGCGCGAAAACTGTGAAAGAAGCCATCCGCATGGGTTCT 994 Query 2218 GAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAA-ACAGCCGTAGG 2276 ||| | ||||| || ||| | || |||| || | |||| || || || || Sbjct 993 GAAGTTTTCCATCACCTGGCAAAAGTTCTGAAAGCGAAAGG-CATGAACACTGCTGTTGG 935 Query 2277 TGACGAAGGTGGTTTCGC-----ACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACT 2331 |||||||||||| | || |||| | ||| | | |||||| | | || | Sbjct 934 TGACGAAGGTGGCTATGCGCCGAACCTGGGTTCCAACG--CTGAAGCTCTGGCTGT---T 880 Query 2332 ATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTT 2391 ||| ||||| | |||||||||| |||| || || |||||| | | | | | Sbjct 879 ATCGCTGAAGCTGTTAAAGCTGCTGGTTATGAACTGGGCAAAGACATCACTTTGGCGATG 820 Query 2392 GACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTT 2451 ||||| ||| | |||||||||||| | ||| ||||| |||| | | | Sbjct 819 GACTGCGCAGCTTCTGAATTCTACAA---AGATGGTAAA---TACG--TTC-------TG 775 Query 2452 GAAGGTGAAGGCGCT---GCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAA 2508 | || |||||| || |||| || ||| |||| | ||| ||| |||||| Sbjct 774 GCTGGCGAAGGCAACAAAGC-GTTC--ACCTCTGAAGAATTCACTCACTTCCTGGAAGAA 718 Query 2509 TTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGAC 2568 || || | ||||| ||| | |||||||||| ||| |||||||| ||||||||| Sbjct 717 CTGACCAAACAGTACCCGATCGTTTCTATCGAAGACGGTCTGGACGAATCTGACTGGGAC 658 Query 2569 GGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTC 2628 |||| || | || || ||| || | ||| | || |||||||||||||| | Sbjct 657 GGTTTCGCATACCAGACCAAAGTTCTGGGCGACAAAATCCAGCTGGTTGGTGACGACCTG 598 Query 2629 TTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATC 2688 |||||||| ||||| ||| || ||||||| | | || |||||||| ||| Sbjct 597 TTCGTAACCAACACCAAGATCCTGAAAGAAGGTATCGAAAAAGGTATCGCTAACTCCATC 538 Query 2689 CTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCG 2748 || |||||| | ||||| |||||| || |||| |||||| | | || ||| | |||||| Sbjct 537 CTGATCAAATTCAACCAGATCGGTTCTCTGACCGAAACTCTGGCTGCAATCAAGATGGCG 478 Query 2749 AAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACA 2808 ||||| ||||| ||||| ||||| | || |||||||| || ||||||||||| | || Sbjct 477 AAAGATGCTGGCTACACTGCAGTTATCTCTCACCGTTCTGGCGAAACTGAAGACGCTACC 418 Query 2809 ATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGT 2868 |||||||| | || |||| ||| || || || || || || ||||| || ||| Sbjct 417 ATCGCTGACCTGGCTGTTGGTACTGCTGCAGGCCAGATCAAAACTGGTTCTATGAGCCGT 358 Query 2869 ACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 |||||||| |||||||||||||||| || ||||||||||||| Sbjct 357 TCTGACCGTGTTGCTAAATACAACCAGCTGATTCGTATCGAAGA 314 >seq1600 Length=6876 Score = 127 bits (140), Expect = 6e-25 Identities = 376/572 (66%), Gaps = 21/572 (4%) Strand=Plus/Minus Query 45137 TCAGAGATACCGTAGTGGTCACCATACATAACAATAATCGAATTATCATAAAGGCCAGTT 45196 ||||| ||||||||||| || ||||| | ||| || || ||||| || ||||| || | Sbjct 4735 TCAGAAATACCGTAGTGATCGCCATATAAAACGATCATAGAATTTTCGTAAAGTCCGCTG 4676 Query 45197 TCCTTAAGGTAATCAAAGAAGTCTTTGATTGCAGAGTCAAGATAGTTGGCTGTTGCAAAA 45256 | || | ||||||||| || ||| |||| || | ||| || || |||||||||||| Sbjct 4675 GCTTTTATGTAATCAAAAAATTCTCTGATAGCTGTATCAGTGTAATTCGCTGTTGCAAAA 4616 Query 45257 TACCCGTTAACTGTTTCGTCTTTTGTGTCAGCGAGTGGGAAACCTTGTTCGTTTTTGTCG 45316 || |||| | ||| ||| | || | ||||||||| | || || Sbjct 4615 TAACCGTCGATCGTTGAGTCGCCGATATCTACTTTTGGGAAACCCTTCTC--------CG 4564 Query 45317 CCTGACAGGGA----AGTGTATGGGTAGTGGTTAGATACGGTTAGGTATTTAACATAGAA 45372 | | |||| | || | |||||||||||||| || | || |||| | || || Sbjct 4563 CTT--CAGGTAATTCAGAAAACGGGTAGTGGTTAGAGACAGCTAAAAATTTCGCGTAAAA 4506 Query 45373 AGGCTGTTGCATTTGTTCCAGATATTTGATGGAAT-CTGAAAACATGTACTTATCATTAA 45431 |||||| ||||| || |||| |||||| | || | ||| ||| | | ||| |||| | Sbjct 4505 AGGCTGCTGCATGTGCTCCAAATATTTCACTGATTGCTGGAAAAAAG-GCTTGTCATGCA 4447 Query 45432 GACCGTATTGGAAGGAGTTTTCATCGGTTTTCTCAGTGAAAGCTGATGAGTCAAAGAAGT 45491 ||||||||||| || || | ||| ||| | | | | || ||||||||||||| Sbjct 4446 ACCCGTATTGGAAAGAATTCTTATC-ATTTAAGCTATAATAACT--AGAGTCAAAGAAGT 4390 Query 45492 AGTTATAACCCCAATGTTTATAGGTATTATTGCGGTTCCAGAAGGATCCAGTGTTTCCGT 45551 | ||||| | ||||||| || | ||||| ||||| || ||||| || || | Sbjct 4389 GCTGGTAACCAAATCGTTTATATGTTTCGTTGCGATTCCAAAAATTTCCAGCATTACCAT 4330 Query 45552 GGAAAACAGCTGAAGTATAGCCACTCGTTTGAGCTAGGATAGATGGTGCAGCGTAAGCTG 45611 | || | || | ||||| || ||||| | | || | ||||| || | | | Sbjct 4329 GAAAGGCGGCAGTTGTATAACCTAATTTTTGATCAAAAATGGCGGGTGCGGCATTAAAGG 4270 Query 45612 TATTGGTACCACCGTAGT-TTACCATATATGACCCTGTACTTAGTCCGAAGAGTGATGTT 45670 |||| | ||||| | | | | ||| | || ||| | | || || || | || || Sbjct 4269 TATTCTTGCCACCTAACTGTGAAAATAGA-GAGCCTTGATTCAGCCCAAATAAAGAATTT 4211 Query 45671 TCCATCAAGGTTTCAGCATCAGAAGTTTTTCC 45702 |||| || ||||| || ||| |||||||| Sbjct 4210 TCCAATAATGTTTCTGCGTCACTGGTTTTTCC 4179 >seq729 Length=25020 Score = 105 bits (116), Expect = 2e-18 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 12486 GCGGTTAACCGTAATTTTAAAGACGCTAA-CGGAGAGCGTGAAACTGACTTTATTAACTG 12544 || || || |||||||||| || | || ||| | || || | || ||||| || || Sbjct 1232 GCTGTGAATCGTAATTTTAC-GAATCAAAGCGGGAATCGCGAGGCGGATTTTATCAATTG 1174 Query 12545 TGTCATTTGGCGACAACAGGCTGAAAATTTGGCTAACTGGGCCAAAAAAGGGGCATTGAT 12604 ||| |||||||| || || |||| ||| ||||| | || ||||| | | | Sbjct 1173 TGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTT 1114 Query 12605 TGGCATTACTGGACGCATTCAAACACGTAGCTACGAGAATCAGCAAGGTCAACGAGTATA 12664 || | ||||| || || |||||| | | || || ||||||||||| ||||| || || Sbjct 1113 AGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCAAGGGCAACGTGTCTA 1054 Query 12665 TGTGACAGAAGTTGTCGCTGAAAATTTTCAAATGCTAGAAAGTCGTGCAGCTCGTGA 12721 ||||||||||||||| ||||| ||||| ||| | | ||| |||| | || |||| Sbjct 1053 TGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAATCTCGTACTGCAAGTGA 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156030699114864