Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq1146 275 2e-69
seq1600 127 6e-25
seq729 105 2e-18
>seq1146
Length=12572
Score = 275 bits (304), Expect = 2e-69
Identities = 562/824 (68%), Gaps = 37/824 (4%)
Strand=Plus/Minus
Query 2100 TCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAA--TCGCTTTCCAA 2157
||| |||||||||||||||||||||||| ||| | ||| ||| | | | ||||
Sbjct 1111 TCCGATGATGAACATCATCAACGGTGGTGAGCACGCTGACAA--CAACGTTGATATCCAG 1054
Query 2158 GAATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCT 2217
||||| |||||| || | ||| || ||| | |||||||| | || |||| ||
Sbjct 1053 GAATTCATGATTCAGCCGGTTGGCGCGAAAACTGTGAAAGAAGCCATCCGCATGGGTTCT 994
Query 2218 GAAATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAA-ACAGCCGTAGG 2276
||| | ||||| || ||| | || |||| || | |||| || || || ||
Sbjct 993 GAAGTTTTCCATCACCTGGCAAAAGTTCTGAAAGCGAAAGG-CATGAACACTGCTGTTGG 935
Query 2277 TGACGAAGGTGGTTTCGC-----ACCTCGTTTCGACGGAACTGAAGATGGTGTTGAAACT 2331
|||||||||||| | || |||| | ||| | | |||||| | | || |
Sbjct 934 TGACGAAGGTGGCTATGCGCCGAACCTGGGTTCCAACG--CTGAAGCTCTGGCTGT---T 880
Query 2332 ATCATCAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTT 2391
||| ||||| | |||||||||| |||| || || |||||| | | | | |
Sbjct 879 ATCGCTGAAGCTGTTAAAGCTGCTGGTTATGAACTGGGCAAAGACATCACTTTGGCGATG 820
Query 2392 GACTGTGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTT 2451
||||| ||| | |||||||||||| | ||| ||||| |||| | | |
Sbjct 819 GACTGCGCAGCTTCTGAATTCTACAA---AGATGGTAAA---TACG--TTC-------TG 775
Query 2452 GAAGGTGAAGGCGCT---GCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAGAA 2508
| || |||||| || |||| || ||| |||| | ||| ||| ||||||
Sbjct 774 GCTGGCGAAGGCAACAAAGC-GTTC--ACCTCTGAAGAATTCACTCACTTCCTGGAAGAA 718
Query 2509 TTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGAC 2568
|| || | ||||| ||| | |||||||||| ||| |||||||| |||||||||
Sbjct 717 CTGACCAAACAGTACCCGATCGTTTCTATCGAAGACGGTCTGGACGAATCTGACTGGGAC 658
Query 2569 GGTTGGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTC 2628
|||| || | || || ||| || | ||| | || |||||||||||||| |
Sbjct 657 GGTTTCGCATACCAGACCAAAGTTCTGGGCGACAAAATCCAGCTGGTTGGTGACGACCTG 598
Query 2629 TTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATC 2688
|||||||| ||||| ||| || ||||||| | | || |||||||| |||
Sbjct 597 TTCGTAACCAACACCAAGATCCTGAAAGAAGGTATCGAAAAAGGTATCGCTAACTCCATC 538
Query 2689 CTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCG 2748
|| |||||| | ||||| |||||| || |||| |||||| | | || ||| | ||||||
Sbjct 537 CTGATCAAATTCAACCAGATCGGTTCTCTGACCGAAACTCTGGCTGCAATCAAGATGGCG 478
Query 2749 AAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACA 2808
||||| ||||| ||||| ||||| | || |||||||| || ||||||||||| | ||
Sbjct 477 AAAGATGCTGGCTACACTGCAGTTATCTCTCACCGTTCTGGCGAAACTGAAGACGCTACC 418
Query 2809 ATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGT 2868
|||||||| | || |||| ||| || || || || || || ||||| || |||
Sbjct 417 ATCGCTGACCTGGCTGTTGGTACTGCTGCAGGCCAGATCAAAACTGGTTCTATGAGCCGT 358
Query 2869 ACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912
|||||||| |||||||||||||||| || |||||||||||||
Sbjct 357 TCTGACCGTGTTGCTAAATACAACCAGCTGATTCGTATCGAAGA 314
>seq1600
Length=6876
Score = 127 bits (140), Expect = 6e-25
Identities = 376/572 (66%), Gaps = 21/572 (4%)
Strand=Plus/Minus
Query 45137 TCAGAGATACCGTAGTGGTCACCATACATAACAATAATCGAATTATCATAAAGGCCAGTT 45196
||||| ||||||||||| || ||||| | ||| || || ||||| || ||||| || |
Sbjct 4735 TCAGAAATACCGTAGTGATCGCCATATAAAACGATCATAGAATTTTCGTAAAGTCCGCTG 4676
Query 45197 TCCTTAAGGTAATCAAAGAAGTCTTTGATTGCAGAGTCAAGATAGTTGGCTGTTGCAAAA 45256
| || | ||||||||| || ||| |||| || | ||| || || ||||||||||||
Sbjct 4675 GCTTTTATGTAATCAAAAAATTCTCTGATAGCTGTATCAGTGTAATTCGCTGTTGCAAAA 4616
Query 45257 TACCCGTTAACTGTTTCGTCTTTTGTGTCAGCGAGTGGGAAACCTTGTTCGTTTTTGTCG 45316
|| |||| | ||| ||| | || | ||||||||| | || ||
Sbjct 4615 TAACCGTCGATCGTTGAGTCGCCGATATCTACTTTTGGGAAACCCTTCTC--------CG 4564
Query 45317 CCTGACAGGGA----AGTGTATGGGTAGTGGTTAGATACGGTTAGGTATTTAACATAGAA 45372
| | |||| | || | |||||||||||||| || | || |||| | || ||
Sbjct 4563 CTT--CAGGTAATTCAGAAAACGGGTAGTGGTTAGAGACAGCTAAAAATTTCGCGTAAAA 4506
Query 45373 AGGCTGTTGCATTTGTTCCAGATATTTGATGGAAT-CTGAAAACATGTACTTATCATTAA 45431
|||||| ||||| || |||| |||||| | || | ||| ||| | | ||| |||| |
Sbjct 4505 AGGCTGCTGCATGTGCTCCAAATATTTCACTGATTGCTGGAAAAAAG-GCTTGTCATGCA 4447
Query 45432 GACCGTATTGGAAGGAGTTTTCATCGGTTTTCTCAGTGAAAGCTGATGAGTCAAAGAAGT 45491
||||||||||| || || | ||| ||| | | | | || |||||||||||||
Sbjct 4446 ACCCGTATTGGAAAGAATTCTTATC-ATTTAAGCTATAATAACT--AGAGTCAAAGAAGT 4390
Query 45492 AGTTATAACCCCAATGTTTATAGGTATTATTGCGGTTCCAGAAGGATCCAGTGTTTCCGT 45551
| ||||| | ||||||| || | ||||| ||||| || ||||| || || |
Sbjct 4389 GCTGGTAACCAAATCGTTTATATGTTTCGTTGCGATTCCAAAAATTTCCAGCATTACCAT 4330
Query 45552 GGAAAACAGCTGAAGTATAGCCACTCGTTTGAGCTAGGATAGATGGTGCAGCGTAAGCTG 45611
| || | || | ||||| || ||||| | | || | ||||| || | | |
Sbjct 4329 GAAAGGCGGCAGTTGTATAACCTAATTTTTGATCAAAAATGGCGGGTGCGGCATTAAAGG 4270
Query 45612 TATTGGTACCACCGTAGT-TTACCATATATGACCCTGTACTTAGTCCGAAGAGTGATGTT 45670
|||| | ||||| | | | | ||| | || ||| | | || || || | || ||
Sbjct 4269 TATTCTTGCCACCTAACTGTGAAAATAGA-GAGCCTTGATTCAGCCCAAATAAAGAATTT 4211
Query 45671 TCCATCAAGGTTTCAGCATCAGAAGTTTTTCC 45702
|||| || ||||| || ||| ||||||||
Sbjct 4210 TCCAATAATGTTTCTGCGTCACTGGTTTTTCC 4179
>seq729
Length=25020
Score = 105 bits (116), Expect = 2e-18
Identities = 167/237 (70%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 12486 GCGGTTAACCGTAATTTTAAAGACGCTAA-CGGAGAGCGTGAAACTGACTTTATTAACTG 12544
|| || || |||||||||| || | || ||| | || || | || ||||| || ||
Sbjct 1232 GCTGTGAATCGTAATTTTAC-GAATCAAAGCGGGAATCGCGAGGCGGATTTTATCAATTG 1174
Query 12545 TGTCATTTGGCGACAACAGGCTGAAAATTTGGCTAACTGGGCCAAAAAAGGGGCATTGAT 12604
||| |||||||| || || |||| ||| ||||| | || ||||| | | |
Sbjct 1173 TGTAATTTGGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTT 1114
Query 12605 TGGCATTACTGGACGCATTCAAACACGTAGCTACGAGAATCAGCAAGGTCAACGAGTATA 12664
|| | ||||| || || |||||| | | || || ||||||||||| ||||| || ||
Sbjct 1113 AGGTGTGACTGGCCGTATCCAAACAAGAAATTATGAAAATCAGCAAGGGCAACGTGTCTA 1054
Query 12665 TGTGACAGAAGTTGTCGCTGAAAATTTTCAAATGCTAGAAAGTCGTGCAGCTCGTGA 12721
||||||||||||||| ||||| ||||| ||| | | ||| |||| | || ||||
Sbjct 1053 TGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAATCTCGTACTGCAAGTGA 997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 156030699114864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |