Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq2084 87.8 2e-12 seq2319 86.0 9e-12 >seq2084 Length=3937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| ||||||||| ||| ||||| ||||||||||||||||| ||||| ||||||| | Sbjct 2678 GGGGGTTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCAAGGGTTCGATT 2619 Query 142853 CCGTTATTCTCCACCA 142868 || ||| ||||||||| Sbjct 2618 CCCTTAATCTCCACCA 2603 >seq2319 Length=3243 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142792 CGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||| |||||||||||| ||||| ||||||||||||||||| |||| |||||||| Sbjct 1070 CGGGGGTGTAGCTCAGTTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGAA 1011 Query 142852 TCCGTTATTCTCCACCA 142868 ||||| ||||||||| Sbjct 1010 CCCGTTCATCTCCACCA 994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691423278694560