Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26]
4,156 sequences; 75,496,394 total letters
Query= NC_031940.1
Length=77375
Score E
Sequences producing significant alignments: (Bits) Value
seq1066 248 4e-61
seq132 89.7 3e-13
seq1689 84.2 1e-11
>seq1066
Length=13853
Score = 248 bits (274), Expect = 4e-61
Identities = 233/297 (78%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 69057 AAAACCATTGGCGCATCTGCTTACGCGTCTTCGTCAGTCTGTTTTGCCCGGCAGGAATAT 69116
|| || ||||||||||| ||| |||||||| | ||| ||| | |||| |||||||||
Sbjct 5991 AACACTATTGGCGCATCCGCTGACGCGTCTGCACCAGCGCGTTCTTCCCGACAGGAATAT 5932
Query 69117 TCACCTGAGTTCGAGCAGGCCTGGTTGGCATATCCAAAACGTGCAGGTGGAAATTCAAAA 69176
||||| || || || ||||||||| || |||||| |||||||| ||||| ||||| ||
Sbjct 5931 TCACCGGAATTTGAACAGGCCTGGCAGGAATATCCCAAACGTGCTGGTGGCAATTCCAAG 5872
Query 69177 TCAGCAGCCTACAAAGCCTGGAAAGCCCGTCTGAAAGAGGGGGTAAATGCTGAAACCATG 69236
|||||||||| ||||||||||||||||||| | | ||||| |||| | || ||||||
Sbjct 5871 TCAGCAGCCTTCAAAGCCTGGAAAGCCCGTATCAGGGAGGGAATAAAACCGGAGACCATG 5812
Query 69237 CTGGAAGGCGTAAAGCGTTATGCGGGATGGGTATCTGCAACGGGGAACAGCGGCACGCAA 69296
|| || ||||| ||||| ||||| | |||||| ||| || || || | |||||| ||
Sbjct 5811 CTTGATGGCGTGAAGCGGTATGCTGCCTGGGTACGTGCCACAGGAAATACCGGCACACAG 5752
Query 69297 TTCGTGAAACAGGCCACCACGTTTTTTGGTCCCGATCGTCATTTTGGGGAGTTATGG 69353
|||||||| ||||| | ||||| ||||| ||||||||||| || | || || |||
Sbjct 5751 TTCGTGAAGCAGGCTGCGACGTTCTTTGGACCCGATCGTCACTTCGAAGACTTCTGG 5695
Score = 228 bits (252), Expect = 4e-55
Identities = 227/294 (77%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 27991 ATTGATTCTGCAATTCCGGGACGTTACACTGTTCAGGCACCTCATAAAGCGGGTGCCGGG 28050
||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 8326 ATTGATTCTGCAAGTCCGGGACGTTACACTGTTCCGGCACCTTATAAAACGGGTGCCGGG 8267
Query 28051 ATTGGCGTCCTGGAATTGTTATCGGCGACAAATGACGCGCCTGCGTCTTTTTTATTGTCG 28110
||| || || ||||||| | ||||| | | |||||||| ||||||||||||| |||
Sbjct 8266 ATTTGCACCCCGGAATTGATCAAGGCGATATACGACGCGCCAGCGTCTTTTTTATCGTCC 8207
Query 28111 CAGCTCGGCTATATCCAAATTATGGTGGGCTGGGTAGGGGCACCGAAAGGTGCGCCGGTT 28170
|||| | | ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 8206 ACGCTCACGCACGCCAGAATTATGGTGGGCTGGGCAGGGGAGCCGAAAGGCTCGCCGGTT 8147
Query 28171 TCCGATAACGCCGGTTACGCCAACCCTGCTCAGTTCACCACCAGTGAAATTGGCGTTTCC 28230
||| | ||||||| || ||||||| ||||| | ||||||| || ||| || |||
Sbjct 8146 TCCTTGATCGCCGGTAGTGCAAACCCTGTTCAGTCCGCCACCAGCGAGATTTGCACCTCC 8087
Query 28231 GGTGGTGGAGTCACATCCAAGTTATCGGAGGCGGCCATCATGGCTACAGTCCCA 28284
||||||||| | || | | |||||| ||||| |||||||| |||||
Sbjct 8086 GGTGGTGGAAGTATTTCACCGATCAAGGAGGCTGCCATTATGGCTACGATCCCA 8033
Score = 147 bits (162), Expect = 1e-30
Identities = 132/166 (80%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 27817 TGCAGGAACTTAACCGCTGGTTTCGTGATGGAAGGGGACTTTATGTCCATGTCATTCGCT 27876
|||| | || || |||||||| ||||| |||||||| | | ||| || || || ||||
Sbjct 9247 TGCAAGTCCTCAATCGCTGGTTCCGTGACGGAAGGGGGCGTCGTGTTCACGTTATACGCT 9188
Query 27877 GGGAACCAGAAACTGAGCGCGTTATCTATCTGCGCAAGGGCTATCCGCATGAGTGTTTTA 27936
|||| || ||||| |||| ||||| |||||||| | || ||||| |||| ||||| |
Sbjct 9187 GGGAGCCTGAAACACAGCGGGTTATTTATCTGCGTGATGGTTATCCATATGAATGTTTCA 9128
Query 27937 GCCCTTTGTGGAAATTCAGGCGTGATTTTGTTGAGTGTGAAGCGCC 27982
|||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 9127 GCCCGTTGTGGTTGTTCAGGCGTGATTTTGTGGAGTGTGAAGCGCC 9082
Score = 140 bits (154), Expect = 2e-28
Identities = 132/167 (79%), Gaps = 1/167 (1%)
Strand=Plus/Minus
Query 67405 TGCAGGAACTTAACCGCTGGTTTCGGGATGGAAGGGGACTTTATGTTCCATGTCATTCGC 67464
|||| | || || |||||||| || || |||||||| | | ||||| | || || |||
Sbjct 9247 TGCAAGTCCTCAATCGCTGGTTCCGTGACGGAAGGGGGCGTCGTGTTC-ACGTTATACGC 9189
Query 67465 TGGGAACCAGAAACTGAGCGCGTTATCTATCTGCGCAAGGGCTATCCGCATGAGTGTTTT 67524
||||| || ||||| |||| ||||| |||||||| | || ||||| |||| |||||
Sbjct 9188 TGGGAGCCTGAAACACAGCGGGTTATTTATCTGCGTGATGGTTATCCATATGAATGTTTC 9129
Query 67525 AGCCCTTTGTGGAAATTCAGGCGTGATTTTGTTGAGTGTGAAGCGCC 67571
||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct 9128 AGCCCGTTGTGGTTGTTCAGGCGTGATTTTGTGGAGTGTGAAGCGCC 9082
Score = 98.7 bits (108), Expect = 5e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 67580 ATTGATTCTGCAATTCCGGGACGTTACACTGTTCAGGCACCTCATAAAGCGGGTGCCGGG 67639
||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 8326 ATTGATTCTGCAAGTCCGGGACGTTACACTGTTCCGGCACCTTATAAAACGGGTGCCGGG 8267
Query 67640 CGTGGAAACCCGGAATT 67656
| | | |||||||||
Sbjct 8266 ATTTGCACCCCGGAATT 8250
>seq132
Length=122212
Score = 89.7 bits (98), Expect = 3e-13
Identities = 83/100 (83%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 37823 GGGAGGGGCGGGTCAAATCCCTGTGA-CCTGACGTCTTCCGGACTGCCCGCCTCAACGGt 37881
|||||||| || |||||| ||| | ||||| | ||| |||||||||||| || || |
Sbjct 120034 GGGAGGGGGAGGCCAAATCTCTGCAATCCTGA-GCCTTAAGGACTGCCCGCCCCATCG-T 119977
Query 37882 ttttttATACCCGCGAAAAATGAAATTTAA-CCAGGAGTG 37920
|||||||||||||||||||||||||||||| || || |||
Sbjct 119976 TTTTTTATACCCGCGAAAAATGAAATTTAATCCGGGCGTG 119937
Score = 87.8 bits (96), Expect = 9e-13
Identities = 72/85 (85%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 77288 GGGAGGGGCGGGTCAAATCCCTGTGA-CCTGACGTCTTCCGGACTGCCCGCCTCAACGtt 77346
|||||||| || |||||| ||| | ||||| | ||| |||||||||||| || ||||
Sbjct 120034 GGGAGGGGGAGGCCAAATCTCTGCAATCCTGA-GCCTTAAGGACTGCCCGCCCCATCGTT 119976
Query 77347 tttttATACCCGCGAAAAATGAAAT 77371
|||||||||||||||||||||||||
Sbjct 119975 TTTTTATACCCGCGAAAAATGAAAT 119951
>seq1689
Length=6107
Score = 84.2 bits (92), Expect = 1e-11
Identities = 113/150 (75%), Gaps = 7/150 (5%)
Strand=Plus/Minus
Query 28132 ATGGTGGGCT-GGGTAGGGGCACCGAAAGGTGCGCCGGTTTCCGATAACGCCGGTTACGC 28190
|||||||| | ||| ||||| || ||| |||||||| || | | | |||||| | ||
Sbjct 3112 ATGGTGGGATCGGGCGGGGGCGTCGTAAGACGCGCCGGTGTCAG-TGAGGCCGGTAATGC 3054
Query 28191 CAACCCTGCTCAGTT-CACCACCAGTGAAATTGGCGTTTCCGGTGGTGGAG-TCA-CATC 28247
|||| | | | ||| ||||||| ||||||||||| ||||||||||||||| ||| ||||
Sbjct 3053 CAACTCCGTCCGGTTTCACCACCCGTGAAATTGGCATTTCCGGTGGTGGAGATCATCATC 2994
Query 28248 CAAGTTATCGGAGGCGGCCATCATGGCTAC 28277
| | | |||||| ||| ||||| ||
Sbjct 2993 --ACTCACTGGAGGCTGCCCCTATGGCAAC 2966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 247462665071776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |