Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20trichiura_20[genbank_20GCA_5F000613005.1_202014-03-26] 4,156 sequences; 75,496,394 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq1066 248 4e-61 seq132 89.7 3e-13 seq1689 84.2 1e-11 >seq1066 Length=13853 Score = 248 bits (274), Expect = 4e-61 Identities = 233/297 (78%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 69057 AAAACCATTGGCGCATCTGCTTACGCGTCTTCGTCAGTCTGTTTTGCCCGGCAGGAATAT 69116 || || ||||||||||| ||| |||||||| | ||| ||| | |||| ||||||||| Sbjct 5991 AACACTATTGGCGCATCCGCTGACGCGTCTGCACCAGCGCGTTCTTCCCGACAGGAATAT 5932 Query 69117 TCACCTGAGTTCGAGCAGGCCTGGTTGGCATATCCAAAACGTGCAGGTGGAAATTCAAAA 69176 ||||| || || || ||||||||| || |||||| |||||||| ||||| ||||| || Sbjct 5931 TCACCGGAATTTGAACAGGCCTGGCAGGAATATCCCAAACGTGCTGGTGGCAATTCCAAG 5872 Query 69177 TCAGCAGCCTACAAAGCCTGGAAAGCCCGTCTGAAAGAGGGGGTAAATGCTGAAACCATG 69236 |||||||||| ||||||||||||||||||| | | ||||| |||| | || |||||| Sbjct 5871 TCAGCAGCCTTCAAAGCCTGGAAAGCCCGTATCAGGGAGGGAATAAAACCGGAGACCATG 5812 Query 69237 CTGGAAGGCGTAAAGCGTTATGCGGGATGGGTATCTGCAACGGGGAACAGCGGCACGCAA 69296 || || ||||| ||||| ||||| | |||||| ||| || || || | |||||| || Sbjct 5811 CTTGATGGCGTGAAGCGGTATGCTGCCTGGGTACGTGCCACAGGAAATACCGGCACACAG 5752 Query 69297 TTCGTGAAACAGGCCACCACGTTTTTTGGTCCCGATCGTCATTTTGGGGAGTTATGG 69353 |||||||| ||||| | ||||| ||||| ||||||||||| || | || || ||| Sbjct 5751 TTCGTGAAGCAGGCTGCGACGTTCTTTGGACCCGATCGTCACTTCGAAGACTTCTGG 5695 Score = 228 bits (252), Expect = 4e-55 Identities = 227/294 (77%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 27991 ATTGATTCTGCAATTCCGGGACGTTACACTGTTCAGGCACCTCATAAAGCGGGTGCCGGG 28050 ||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||| Sbjct 8326 ATTGATTCTGCAAGTCCGGGACGTTACACTGTTCCGGCACCTTATAAAACGGGTGCCGGG 8267 Query 28051 ATTGGCGTCCTGGAATTGTTATCGGCGACAAATGACGCGCCTGCGTCTTTTTTATTGTCG 28110 ||| || || ||||||| | ||||| | | |||||||| ||||||||||||| ||| Sbjct 8266 ATTTGCACCCCGGAATTGATCAAGGCGATATACGACGCGCCAGCGTCTTTTTTATCGTCC 8207 Query 28111 CAGCTCGGCTATATCCAAATTATGGTGGGCTGGGTAGGGGCACCGAAAGGTGCGCCGGTT 28170 |||| | | ||||||||||||||||| ||||| |||||||| |||||||| Sbjct 8206 ACGCTCACGCACGCCAGAATTATGGTGGGCTGGGCAGGGGAGCCGAAAGGCTCGCCGGTT 8147 Query 28171 TCCGATAACGCCGGTTACGCCAACCCTGCTCAGTTCACCACCAGTGAAATTGGCGTTTCC 28230 ||| | ||||||| || ||||||| ||||| | ||||||| || ||| || ||| Sbjct 8146 TCCTTGATCGCCGGTAGTGCAAACCCTGTTCAGTCCGCCACCAGCGAGATTTGCACCTCC 8087 Query 28231 GGTGGTGGAGTCACATCCAAGTTATCGGAGGCGGCCATCATGGCTACAGTCCCA 28284 ||||||||| | || | | |||||| ||||| |||||||| ||||| Sbjct 8086 GGTGGTGGAAGTATTTCACCGATCAAGGAGGCTGCCATTATGGCTACGATCCCA 8033 Score = 147 bits (162), Expect = 1e-30 Identities = 132/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 27817 TGCAGGAACTTAACCGCTGGTTTCGTGATGGAAGGGGACTTTATGTCCATGTCATTCGCT 27876 |||| | || || |||||||| ||||| |||||||| | | ||| || || || |||| Sbjct 9247 TGCAAGTCCTCAATCGCTGGTTCCGTGACGGAAGGGGGCGTCGTGTTCACGTTATACGCT 9188 Query 27877 GGGAACCAGAAACTGAGCGCGTTATCTATCTGCGCAAGGGCTATCCGCATGAGTGTTTTA 27936 |||| || ||||| |||| ||||| |||||||| | || ||||| |||| ||||| | Sbjct 9187 GGGAGCCTGAAACACAGCGGGTTATTTATCTGCGTGATGGTTATCCATATGAATGTTTCA 9128 Query 27937 GCCCTTTGTGGAAATTCAGGCGTGATTTTGTTGAGTGTGAAGCGCC 27982 |||| |||||| ||||||||||||||||| |||||||||||||| Sbjct 9127 GCCCGTTGTGGTTGTTCAGGCGTGATTTTGTGGAGTGTGAAGCGCC 9082 Score = 140 bits (154), Expect = 2e-28 Identities = 132/167 (79%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 67405 TGCAGGAACTTAACCGCTGGTTTCGGGATGGAAGGGGACTTTATGTTCCATGTCATTCGC 67464 |||| | || || |||||||| || || |||||||| | | ||||| | || || ||| Sbjct 9247 TGCAAGTCCTCAATCGCTGGTTCCGTGACGGAAGGGGGCGTCGTGTTC-ACGTTATACGC 9189 Query 67465 TGGGAACCAGAAACTGAGCGCGTTATCTATCTGCGCAAGGGCTATCCGCATGAGTGTTTT 67524 ||||| || ||||| |||| ||||| |||||||| | || ||||| |||| ||||| Sbjct 9188 TGGGAGCCTGAAACACAGCGGGTTATTTATCTGCGTGATGGTTATCCATATGAATGTTTC 9129 Query 67525 AGCCCTTTGTGGAAATTCAGGCGTGATTTTGTTGAGTGTGAAGCGCC 67571 ||||| |||||| ||||||||||||||||| |||||||||||||| Sbjct 9128 AGCCCGTTGTGGTTGTTCAGGCGTGATTTTGTGGAGTGTGAAGCGCC 9082 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 67580 ATTGATTCTGCAATTCCGGGACGTTACACTGTTCAGGCACCTCATAAAGCGGGTGCCGGG 67639 ||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||| Sbjct 8326 ATTGATTCTGCAAGTCCGGGACGTTACACTGTTCCGGCACCTTATAAAACGGGTGCCGGG 8267 Query 67640 CGTGGAAACCCGGAATT 67656 | | | ||||||||| Sbjct 8266 ATTTGCACCCCGGAATT 8250 >seq132 Length=122212 Score = 89.7 bits (98), Expect = 3e-13 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 37823 GGGAGGGGCGGGTCAAATCCCTGTGA-CCTGACGTCTTCCGGACTGCCCGCCTCAACGGt 37881 |||||||| || |||||| ||| | ||||| | ||| |||||||||||| || || | Sbjct 120034 GGGAGGGGGAGGCCAAATCTCTGCAATCCTGA-GCCTTAAGGACTGCCCGCCCCATCG-T 119977 Query 37882 ttttttATACCCGCGAAAAATGAAATTTAA-CCAGGAGTG 37920 |||||||||||||||||||||||||||||| || || ||| Sbjct 119976 TTTTTTATACCCGCGAAAAATGAAATTTAATCCGGGCGTG 119937 Score = 87.8 bits (96), Expect = 9e-13 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 77288 GGGAGGGGCGGGTCAAATCCCTGTGA-CCTGACGTCTTCCGGACTGCCCGCCTCAACGtt 77346 |||||||| || |||||| ||| | ||||| | ||| |||||||||||| || |||| Sbjct 120034 GGGAGGGGGAGGCCAAATCTCTGCAATCCTGA-GCCTTAAGGACTGCCCGCCCCATCGTT 119976 Query 77347 tttttATACCCGCGAAAAATGAAAT 77371 ||||||||||||||||||||||||| Sbjct 119975 TTTTTATACCCGCGAAAAATGAAAT 119951 >seq1689 Length=6107 Score = 84.2 bits (92), Expect = 1e-11 Identities = 113/150 (75%), Gaps = 7/150 (5%) Strand=Plus/Minus Query 28132 ATGGTGGGCT-GGGTAGGGGCACCGAAAGGTGCGCCGGTTTCCGATAACGCCGGTTACGC 28190 |||||||| | ||| ||||| || ||| |||||||| || | | | |||||| | || Sbjct 3112 ATGGTGGGATCGGGCGGGGGCGTCGTAAGACGCGCCGGTGTCAG-TGAGGCCGGTAATGC 3054 Query 28191 CAACCCTGCTCAGTT-CACCACCAGTGAAATTGGCGTTTCCGGTGGTGGAG-TCA-CATC 28247 |||| | | | ||| ||||||| ||||||||||| ||||||||||||||| ||| |||| Sbjct 3053 CAACTCCGTCCGGTTTCACCACCCGTGAAATTGGCATTTCCGGTGGTGGAGATCATCATC 2994 Query 28248 CAAGTTATCGGAGGCGGCCATCATGGCTAC 28277 | | | |||||| ||| ||||| || Sbjct 2993 --ACTCACTGGAGGCTGCCCCTATGGCAAC 2966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247462665071776