Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1267 100 5e-19 seq3104 87.8 3e-15 seq3922 86.0 1e-14 seq5089 82.4 1e-13 >seq1267 Length=2447 Score = 100 bits (110), Expect = 5e-19 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| | ||| |||||||||| |||||||| | | ||||||||| | |||| Sbjct 1620 ATTGCAATTATTCC-CTTGAACGAGGAATTCCTAGTAAATGTGAGTCATCAGCTCACGTT 1678 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 1679 GATTACGTCCCTGCCCTTTGTA 1700 >seq3104 Length=7937 Score = 87.8 bits (96), Expect = 3e-15 Identities = 98/129 (76%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||| | ||||| | | | ||| || ||| | ||| | | |||||||||||| Sbjct 3433 GAAGGTATTGGTAACCCTTTGAAAATCCTCAGTGATCGGGGTCAGGAATTGCAATTATTC 3492 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 | ||| |||||||||| |||||||| | | |||||| | ||||||||||||||||| Sbjct 3493 C-CTTGAACGAGGAATTCCTAGTAAATGTGAGTCATCT---CACGTTGATTACGTCCCTG 3548 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 3549 CCCTTTGTA 3557 >seq3922 Length=16709 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| | ||| || || |||| ||||||| | | | || |||| | | |||| Sbjct 6542 ATTGCAATTATTTCCCTTGAATGACGAATTCCTAGTATGTGTGAGTTATCAACTCACGTT 6601 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 6602 GATTACGTCCCTGCCCTTTGTA 6623 >seq5089 Length=301850 Score = 82.4 bits (90), Expect = 1e-13 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | ||| |||| ||||| ||||| || | | |||||||| |||||||| Sbjct 64752 TGCAATTATTTC-CTTGAACGGGGAATTCCTAGGAAATGTGAATCATCAGCTCGCGTTGA 64810 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||| || Sbjct 64811 TTACGTCCCTGCCCTTTATA 64830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947151645440