Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wuchereria_20bancrofti_20[genbank_20GCA_5F001555675.1_202016-02-09] 5,105 sequences; 90,325,107 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5042 266 1e-68 seq4563 232 2e-58 seq4575 228 3e-57 seq5092 210 7e-52 seq4914 167 8e-39 seq5091 145 2e-32 seq5053 114 4e-23 seq5027 89.7 2e-15 >seq5042 Length=180356 Score = 266 bits (294), Expect = 1e-68 Identities = 150/152 (99%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175183 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 175124 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 175123 CGTTAATCCATTCATGCGCGTCACGAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 175064 Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||||||||| ||||| Sbjct 175063 GTCATAGTTACTCCCGCCGTTTACCCACGCTT 175032 >seq4563 Length=38996 Score = 232 bits (256), Expect = 2e-58 Identities = 159/182 (87%), Gaps = 13/182 (7%) Strand=Plus/Plus Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||| |||||||||| ||| ||||||||||||||||||| Sbjct 32596 ACAGGGTCTTCCTTCCCCGCTGT-------------GTTTGCTTGGCTGTGGTTTCGCTA 32642 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 32643 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCATGAATTATAT 32702 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct 32703 GACGAGGCATTTGGCTACCGTAAGAGAGTCACAGTTACTCCCGTCGTTTACCCGCGCTTG 32762 Query 476 GT 477 || Sbjct 32763 GT 32764 >seq4575 Length=39772 Score = 228 bits (252), Expect = 3e-57 Identities = 141/151 (93%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 ||| |||||||||||||||||||||||||| | |||| | | |||||||||| ||||| Sbjct 22262 CTAAAGTCAAGCTCAACAGGGTCTTCTTTCTCAGCTGTGTTTGTCAAGCCCGTTTCCTTG 22321 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22322 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 22381 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||||| |||||||||||||||||||||||| Sbjct 22382 CGTCACGAATTAGATGACGAGGCATTTGGCT 22412 >seq5092 Length=326023 Score = 210 bits (232), Expect = 7e-52 Identities = 175/213 (82%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||| | ||||||| ||||| | ||||||| ||||||||| |||||| ||||| Sbjct 73301 TCAACAGGATTTTCTTTCTTCGCTGTGTTTGCCAAGCTCGTTCCCTTAGCTGTGATTTCG 73360 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||| ||||||||||| ||||||||||||| |||| | | |||||||||| ||||| Sbjct 73361 CTAGACAGTAGATAGGGGCAGTGGGAATCTCATTAAAT-ACTGATGCGCGTCATGAATTA 73419 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 ||||| ||||||||||||||| ||||| |||| ||||||| || ||||||||| | || Sbjct 73420 GATGATAAGGCATTTGGCTACCCTAAGAATGTCAAAGTTACTTCCACCGTTTACCTGTGC 73479 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 | |||||||| | ||| ||| ||||| ||||| Sbjct 73480 TCGGTTGAATCCCATCATTTTCACATTTAGAGC 73512 >seq4914 Length=93660 Score = 167 bits (184), Expect = 8e-39 Identities = 152/188 (81%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 ||||||||| |||||| |||| ||| | | |||| ||||||| ||| |||||||||| Sbjct 40681 AGCTCAACAAGGTCTTTTTTCTCCGTTATGTTTGCCATGCCCGTTTCCT-GGCTGTGGTT 40739 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 || | | || ||||||| ||| | ||||||||||||||||| |||| | || ||| || Sbjct 40740 TCACCAAGTACTAGATAGAGACCGCGGGAATCTCGTTAATCCCTTCAAGTGCATCATGAA 40799 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 |||||||| || | ||||||||||| || || || |||||||||||||||| ||||||| Sbjct 40800 TTAGATGAGGAAGTATTTGGCTACCCTA--AGCGTTATAGTTACTCCCGCCGCTTACCCG 40857 Query 470 CGCTTGGT 477 || ||||| Sbjct 40858 CG-TTGGT 40864 >seq5091 Length=321914 Score = 145 bits (160), Expect = 2e-32 Identities = 97/107 (91%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 ||||||||| |||||||||||| || ||| || |||||||||||||| |||||||||| Sbjct 53023 CAAGCTCAATAGGGTCTTCTTTTTCCCCTGTTT--GCCAAGCCCGTTCCTTTGGCTGTGG 52966 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 52965 TTTCGCTAGATAATAGATAGGGACAGTGGCAATCTCGTTAATCCATT 52919 >seq5053 Length=200827 Score = 114 bits (126), Expect = 4e-23 Identities = 162/224 (72%), Gaps = 18/224 (8%) Strand=Plus/Minus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||| | | |||||||||||||| | | ||| ||||| || | | ||||| | Sbjct 170450 TCAACAAGATTTTCTTTCCCCGCTGTGTTTGGCAAA---GTTCC-TTAACAGCGGTTT-G 170396 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||| ||| |||| | |||||||||| || ||||||||||||||||| ||||||| ||||| Sbjct 170395 CTAAATAATAGAGAAGGACAGTGGGGATTTCGTTAATCCATTCATG-GCGTCACGAATTA 170337 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 | || || | | ||||||| ||| | |||| ||| | ||||| | Sbjct 170336 AGTAACAAGCGAACT-GCTACCTAAAGTAATCCATATTTA-----------TTCCCGCTC 170289 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 | ||||||||||||| ||| ||||||||| | ||||||||| Sbjct 170288 TCACTTGAATTTCTTCATTTTTGCATTCAGAGAATTGGGCAGAA 170245 >seq5027 Length=160066 Score = 89.7 bits (98), Expect = 2e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 ||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||||||| Sbjct 82545 GCGCGTCACGAATTAGATGACGAGGTATTTGGTTACCTTAAGAGAGTCATAATTACTCCT 82486 Query 458 GC 459 || Sbjct 82485 GC 82484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635116523040