Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2475 163 4e-38 seq1291 159 5e-37 >seq2475 Length=681215 Score = 163 bits (180), Expect = 4e-38 Identities = 177/226 (78%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 615079 GTACAAAGGGTAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 615022 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-AT--TTCAAAGA 117 |||||| | | ||||||||||| | ||||| |||||| | || |||| | Sbjct 615021 CTCGTTTACGGGGAACAATTGCAAGCCCCGATCCCAGTCACGACGGTTATGGTTCA--GT 614964 Query 118 TTACCCGGACCTGTCGGCCAAGG-TGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||||| ||| |||| | ||| | | |||||||||| | ||| |||||||| ||| Sbjct 614963 TTACCCAACCCTTTCGGGCTAGGATCCCAAACTCGTTGAAACCGTCATTGTAGCGCACGT 614904 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 614903 GCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 614859 >seq1291 Length=564679 Score = 159 bits (176), Expect = 5e-37 Identities = 176/226 (78%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 272414 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 272357 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-AT--TTCAAAGA 117 |||||| | | ||||||||||| | ||||| |||||| | || |||| | Sbjct 272356 CTCGTTCACGGGGAACAATTGCAAGCCCCGATCCCAGTCACGACGGTTATGGTTCA--GT 272299 Query 118 TTACCCGGACCTGTCGGCCAAGG-TGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||||| ||| |||| | || | | |||||||||| | ||| |||||||| ||| Sbjct 272298 TTACCCAACCCTTTCGGTCTGGGATCCCAAACTCGTTGAAACCGTCATTGTAGCGCACGT 272239 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||||| | |||||||| ||||||||||||||||||||| ||||| Sbjct 272238 GCGGCCCCGGACATCTAAAGGCATCACAGACCTGTTATTG-CTCAA 272194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751968324820