Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2475 181 2e-43 seq2360 176 8e-42 >seq2475 Length=681215 Score = 181 bits (200), Expect = 2e-43 Identities = 213/282 (76%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||||||| || |||||| ||| | | | || ||||||||||| | ||| ||||| || Sbjct 614085 TGCCCTTAACCGGGTGTCGGGGGCGGACGGCACGTTTACTTTGAACACATTTGAGTGCTC 614144 Query 100 AAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| | ||| ||| | | |||||||||||| ||||||||| | ||||| Sbjct 614145 AAAGCAGGCCCGTGTGCCTGAAAATTCTCGCATGGAATAATGGAATAGGACTT-CGGTTT 614203 Query 158 TATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||||||||||||| | ||| ||| |||||| |||| ||||| || |||||| | || Sbjct 614204 TATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAAAGGGACAGACGGGGGCATTTGT 614262 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 || || || |||||||||||||||| |||| |||||| || ||||| || Sbjct 614263 ATGGTGGCGTTAGTGGTGAAATTCTTGGATCACCGCCAGACAAACTACAGCAAAAGCATT 614322 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||||| ||| | || ||||||| || || Sbjct 614323 TGCCAAGGATGTTTTCATTGATCTG-GAGCGAAAGTCAGAGG 614363 >seq2360 Length=1183466 Score = 176 bits (194), Expect = 8e-42 Identities = 213/282 (76%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||||||| || |||||| |||||| | ||| ||||||||||| ||||| ||||| || Sbjct 843222 TGCCCTTAACCGGGTGT-CCGGGGCG----GACGTTTACTTTGAACAAATTTGAGTGCTC 843168 Query 100 AAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||| | ||| ||| | | || ||||| ||| |||||||| | || || Sbjct 843167 AAAGCAGGCCCGTGTGCCTGAAAATTCTTGCCTGGAACAATGGAATAGGATTT-CGATTA 843109 Query 158 TATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||||||||||||| | ||| ||| |||||| |||| ||||| || ||| || | || Sbjct 843108 TATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAAAGGGACAGACGGTGGCATTTGT 843050 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 || | | ||||||||||||||||||| |||| |||||| |||||||| || Sbjct 843049 ATGGCGGTTTTAGAGGTGAAATTCTTGGATCACCGCCAGACAAACTACAGCGAAAGCATT 842990 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||||| ||| | || ||||||| || || Sbjct 842989 TGCCAAGGATGTTTTCATTGATCTG-GAGCGAAAGTCAGAGG 842949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915160207104