Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2476 149 3e-33 seq1708 109 2e-21 seq1514 100 1e-18 seq196 95.1 5e-17 >seq2476 Length=687064 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || | ||| ||||||||||||||||||||||| || ||| ||||| Sbjct 281977 GAGCATGAGCGTACGTCTTGAGACCCGAAAGATGGTGAACTATGTTTGCGCAGGTTGAAG 282036 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| | Sbjct 282037 CCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCAGACG 282096 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 282097 TGAGTATAGGGGCGA 282111 >seq1708 Length=133461 Score = 109 bits (120), Expect = 2e-21 Identities = 105/135 (78%), Gaps = 10/135 (7%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||||| ||||||||||||| |||||||| || ||| ||||| Sbjct 83802 GAGCATGAGCGTACATGTTGAGACCCGAAAGATG---AACTATGCTTGCGCAGGTTGAAG 83746 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||| ||||||| | ||| |||||||||||| ||||| | Sbjct 83745 CCAGAGGAAACTCTGGC-------CGCAGCGATCCTGACGTGCAAATCGACCGTCAGACG 83693 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 83692 TGAGTATAGGGGCGA 83678 >seq1514 Length=305774 Score = 100 bits (110), Expect = 1e-18 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||||| || |||| |||||| | | || || |||||| Sbjct 209793 GAGTCGGGTTGTTTGTGAATGCAGCTCAAAGTGGGTGGTAAACTGCATCCAAGACTAAAT 209734 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | || ||| | ||||||| || |||| | ||| ||||| | ||||| |||||| | Sbjct 209733 ACTTGCACGAGTCGGATAGCGAACGAGTAACGCGATGGAAAGTTTAAAAGGACTTTGAAG 209674 Query 160 AGAGAGTTAA 169 || |||| || Sbjct 209673 AGGGAGTAAA 209664 >seq196 Length=93754 Score = 95.1 bits (104), Expect = 5e-17 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 || || ||||||||| |||||||||||||| || ||| | ||||||| |||| || | Sbjct 83933 TGATGAGACCCGAAAAATGGTGAACTATGCTTGCGCAGGTTTCAGCCAGAAGAAATTCCG 83874 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||| | || || ||||| |||||||||||||||| || |||||||||||| Sbjct 83873 GTGAAGGACCACATCGATTCTGATTTGCAAATCGATCGTCAGGCGTGAGTATAGGGGCGA 83814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079906735400