Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1055 176 6e-42 >seq1055 Length=5557 Score = 176 bits (194), Expect = 6e-42 Identities = 195/255 (76%), Gaps = 10/255 (4%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || |||| | || || |||| Sbjct 1368 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTC-GTGTTTGCACA 1426 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||| || || || | ||| |||| |||||| | Sbjct 1427 GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGATTTCAGCTCCA 1486 Query 122 C----ACGTCG-TTCACCAGCAGTGGCACC---CCTTCTCCCGAAGTTACGGGGCCATTT 173 | | |||| |||||| || | || | ||||||||||||||||||| |||||| Sbjct 1487 CGAGCAAGTCGCTTCACCTACA-TATCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTT 1545 Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTG 233 |||| | |||||| ||| ||||| | | | |||||| |||||||||||||||||||||| Sbjct 1546 TGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTG 1605 Query 234 TGTCGGTTTACGGTA 248 ||||||||| |||| Sbjct 1606 TGTCGGTTTGGGGTA 1620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694370751004